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Showing :
Pathway
•
reset
2
votes
11
replies
4.4k
views
Recent build and parsing error in pathview
pathview
KEGGgraph
gage
pathway
pathway analysis
6.7 years ago
Luo Weijun
★ 1.6k
5
votes
6
replies
1.4k
views
DESeq2 w. pathway/network info as a prior knowledge
deseq2
pathway
ihw
updated 5.1 years ago by
Michael Love
41k • written 5.1 years ago by
guidobarzaghi
▴ 20
4
votes
4
replies
1.6k
views
How I interpret this plot from pathview
pathview
kegg
r
pathway
4.4 years ago • updated 4.3 years ago
AZ
▴ 30
1
vote
3
replies
577
views
Can CAMERA analyze just one particular pathway
pathway
ORA
limma
CAMERA
DGE
updated 7 months ago by
Gordon Smyth
50k • written 7 months ago by
manuelsokolov
• 0
2
votes
3
replies
1.0k
views
Accounting for Gene Set Overlaps in Goana and Kegga Results
limma
pathway
updated 4.6 years ago by
mikhael.manurung
▴ 270 • written 4.6 years ago by
Dario Strbenac
★ 1.5k
3
votes
3
replies
4.4k
views
Genelist input for ClusterProfiler
R
ClusterProfiler
Enrichment
Pathway
updated 9 months ago by
Guido Hooiveld
★ 3.9k • written 3.9 years ago by
t.b.kuipers
• 0
0
votes
3
replies
1.0k
views
extracting the genes associated with a specific pathway
pathway
KEGG
annotation
annotationhub
updated 3.8 years ago by
James W. MacDonald
65k • written 3.8 years ago by
Bogdan
▴ 670
2
votes
2
replies
1.4k
views
paxtoolsr how to extract Modificationfeature related to a node
pathway
paxtools
9.4 years ago
Guido Leoni
▴ 200
0
votes
2
replies
702
views
Adjusting DESeq2 p-values through IHW using pathway information as covariate
IHW
deseq2
Pathway
updated 5.1 years ago by
Michael Love
41k • written 5.1 years ago by
guidobarzaghi
▴ 20
0
votes
1
reply
872
views
igraph page_rank miR2Pathway: Top ranked list, printing out pathway names
igraph
miR2Pathway
Pathway
page_rank
updated 6.0 years ago by
Martin Morgan
25k • written 6.0 years ago by
genomic8328
▴ 10
0
votes
1
reply
881
views
News:
SBGNview manuscript on bioRxiv now
pathway
SBGNview
Reactome
pathview
PANTHER
written 3.0 years ago by
Luo Weijun
★ 1.6k
2
votes
1
reply
943
views
GSEA generate genesets
pathway
KEGGREST
GSEA
updated 3.0 years ago by
Kevin Blighe
★ 3.9k • written 3.0 years ago by
MOHAMMAD
• 0
0
votes
0
replies
762
views
Help with mapping Kegg hsa01100 using pathview
kegg
pathway
pathview
5.1 years ago
Ahdee
▴ 50
13 results • Page
1 of 1
Recent ...
Replies
Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
by
Michael Love
41k
Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Votes
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
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