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Peaks
•
reset
3
votes
3
replies
4.0k
views
Error "if (is.na(peaks)) { : argument is of length zero " in DiffBind
diffbind
chipseq
peaks
dba
is.na
6.0 years ago
maria.kondili
▴ 10
1
vote
1
reply
1.4k
views
How do I know which peak to analyze?
bioconductor
annotation
peaks
updated 6.4 years ago by
Sean Davis
21k • written 6.4 years ago by
schaud24
▴ 10
2
votes
3
replies
2.3k
views
Counting reads in fixed width peaks with DiffBind::dba.count without re-centering?
diffbind
chipseq
counts
peaks
bedtools
updated 3.0 years ago by
Rory Stark
★ 5.1k • written 6.0 years ago by
Ni-Ar
▴ 10
0
votes
4
replies
948
views
nucleR ERROR unable to find an inherited method for function peakDetection for signature
nucleosome
peaks
error
Job
updated 4.4 years ago by
James W. MacDonald
65k • written 4.4 years ago by
anne.kannengiesser
• 0
0
votes
0
replies
739
views
Are broad/narrow peak comparable?
Peaks
MAC2
DiffBind
2.8 years ago
Yuan Tian
▴ 270
5 results • Page
1 of 1
Recent ...
Replies
Comment: Differential peaks that were not identified in diffbind were identified in diseq
by
lonn
• 0
Thank you for your suggestions! Here is the MA plot: ![enter image description here][1] I tried several normalization methods with DiffBi…
Answer: OrgDb for maize
by
Guido Hooiveld
★ 3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
Comment: Theoretical WGCNA Question
by
Garrett
• 0
Thanks Peter!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
sropri
• 0
Thank you!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
alserg
▴ 240
They are reorder in the decreasing order.
Votes
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
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