Biostar Peaks

Showing : Peaks • reset

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2.7k

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diffbind chipseq peaks dba is.na

4.1 years ago maria.kondili ▴ 10

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1.2k

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diffbind chipseq counts peaks bedtools

updated 12 months ago by Rory Stark ★ 4.4k • written 4.1 years ago by Ni-Ar ▴ 10

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722

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bioconductor annotation peaks

updated 4.5 years ago by Sean Davis 21k • written 4.5 years ago by schaud24 ▴ 10

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433

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nucleosome peaks error Job

updated 2.5 years ago by James W. MacDonald 60k • written 2.5 years ago by anne.kannengiesser • 0

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237

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Peaks MAC2 DiffBind

10 months ago Yuan Tian ▴ 250

5 results • Page 1 of 1

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Comment: Confused about the design matrix in edgeR: How to tell R to consider one level a by Gordon Smyth 45k

When I answered your original question, I assumed you would use the simplest possible code ``` Status <- factor(Sample_info$Status) ``` w…

Comment: Confused about the design matrix in edgeR: How to tell R to consider one level a by Mohamed • 0

Thanks a lot, will try this and see.

Answer: Confused about the design matrix in edgeR: How to tell R to consider one level a by Steve Lianoglou 13k

> My question is why the design matrix named its last column ' StatusControl' and not 'statustreated' ? It's because the Intercept is th…

Comment: Italicise by Kevin Blighe 3.5k

Hi, can you compare the contents of your variable, `lab_italics` , versus those of the variable (`selectLab_italics`) that is produced in m…

Comment: Need help for ProStaR Stand-alone install by Wang • 0

Hi, I have installed the "Prostar" package, and loaded in my rstudio work session. But, when I trying to use the Prostar() for open a GUI …

Votes

Answer: Confused about the design matrix in edgeR: How to tell R to consider one level a

Answer: biomaRt error unable to fix: need help troubleshooting

Answer: edgeR : results from goana and kegga functions show opposite sig. p-value

Answer: paired analysis : return data matrix with indvidual/subject effects eliminated.

DESeq2: likelihood ratio test interpretation, multifactor

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Teacher to Michael Love 37k