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Phylogenetics
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2.4k
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does anyone how to create rarefaction curves from a phyloseq object?
phyloseq
Phylogenetics
updated 13 months ago by
RMiller
▴ 10 • written 13 months ago by
kevin
• 0
1
vote
2
replies
2.3k
views
Bootstrap value using ape package and including it in phylogenetic tree
Phylogenetics
2.7 years ago
Lanjamarina
• 0
0
votes
6
replies
1.4k
views
convert default phylip to sequential phylip
phyloseq
Phylogenetics
updated 12 months ago by
yrkkhdesiserials
• 0 • written 2.7 years ago by
memy
• 0
0
votes
0
replies
1.1k
views
Co-occurrence Network Analysis between Algae and Bacteria
igraph
networkanalysis
Phylogenetics
phyloseq
3.3 years ago
Chantel
• 0
0
votes
0
replies
895
views
Job:
Postdoctoral Fellow in Sars-CoV-2 genomics and transcriptomics @ Paul-Ehrlich-Institute, Germany
rna-seq
phylogenetics
protein modelling
single-cell sequencing
Job
3.7 years ago
liam.childs
• 0
0
votes
0
replies
830
views
How to assign custom colour codes for Multiple sequence alignment (MSA)?
Phylogenetics
genomes
R
MultipleSequenceAlignment
Bioconductor
2.7 years ago
K.
• 0
6 results • Page
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Comment: DESeq2 output used for PCA plot on R studio
by
Aaliya
• 0
How am i making the data? I am using the DESeq2 output data which I had generated
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
by
Michael Love
41k
Sounds reasonable. For ranking genes, you could choose those with low decay rate but removing thoses where it is indistinguishable from …
Answer: Citation for edgeR user guide
by
Gordon Smyth
50k
Thanks for thinking about how to cite edgeR. Citations are indeed the main way by which the edgeR authors get credit for their work. The Us…
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
You are just making up data? What is the point of this exercise?
Comment: How to retrieve gene ontology GO class?
by
James W. MacDonald
65k
What do you mean by 'the information'? Do you have things in particular that you want?
Votes
Answer: Citation for edgeR user guide
Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
Answer: minfi::read.metharray.exp
Comment: Trying to use enrichGO
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