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Phylogenetics
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Bootstrap value using ape package and including it in phylogenetic tree
Phylogenetics
2.6 years ago
Lanjamarina
• 0
1
vote
1
reply
2.2k
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does anyone how to create rarefaction curves from a phyloseq object?
phyloseq
Phylogenetics
updated 12 months ago by
RMiller
▴ 10 • written 12 months ago by
kevin
• 0
0
votes
0
replies
870
views
Job:
Postdoctoral Fellow in Sars-CoV-2 genomics and transcriptomics @ Paul-Ehrlich-Institute, Germany
rna-seq
phylogenetics
protein modelling
single-cell sequencing
Job
3.7 years ago
liam.childs
• 0
0
votes
0
replies
1.0k
views
Co-occurrence Network Analysis between Algae and Bacteria
igraph
networkanalysis
Phylogenetics
phyloseq
3.2 years ago
Chantel
• 0
0
votes
0
replies
797
views
How to assign custom colour codes for Multiple sequence alignment (MSA)?
Phylogenetics
genomes
R
MultipleSequenceAlignment
Bioconductor
2.6 years ago
K.
• 0
0
votes
6
replies
1.3k
views
convert default phylip to sequential phylip
phyloseq
Phylogenetics
updated 11 months ago by
yrkkhdesiserials
• 0 • written 2.6 years ago by
memy
• 0
6 results • Page
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Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Comment: DEG Filtering
by
Gordon Smyth
50k
I already know that you using CEL files because you need them to perform RMA normalization. Yes, you should follow the advice I have alread…
Votes
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
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