Bioconductor Piano

Showing : Piano • reset

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2.2k

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affy limma piano

updated 4.2 years ago by James W. MacDonald 64k • written 4.2 years ago by abolfazl.nikakhtar • 0

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19k

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ssgsea gsva piano egsea

updated 12 hours ago by amin8w ▴ 10 • written 6.4 years ago by sina.nassiri ▴ 130

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1.5k

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rsbml piano libsbml gene set enrichment analysis

updated 5.1 years ago by Michael Lawrence 11k • written 5.1 years ago by jan.strauss • 0

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1.0k

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piano microarray

updated 6.1 years ago by James W. MacDonald 64k • written 6.1 years ago by rf • 0

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1.1k

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piano gseabase

6.9 years ago Lluís Revilla Sancho ▴ 720

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1.2k

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piano runGSA runtime

updated 6.9 years ago by Leif Väremo ▴ 70 • written 6.9 years ago by rubi ▴ 110

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1.6k

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deseq2 gene ontology piano

7.1 years ago simonp.snoeck • 0

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1.4k

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piano runGSA

updated 7.5 years ago by Leif Väremo ▴ 70 • written 7.5 years ago by rubi ▴ 110

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1.1k

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Piano List

updated 8.6 years ago by Leif Väremo ▴ 70 • written 8.6 years ago by nonCodingGene ▴ 10

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2.1k

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piano

updated 8.7 years ago by Leif Väremo ▴ 70 • written 8.7 years ago by nonCodingGene ▴ 10

10 results • Page 1 of 1

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Comment: RNASeq time course analysis, missing time points for control by drewhaydensteele • 0

Thanks Gordon, that's perfect

Comment: Ensembl down??? by James W. MacDonald 64k

I normally caution against mapping between annotation sources (NCBI and Ensembl), as it usually doesn't work well. However, it is possible.…

Answer: NCBI protein conversion to CDNA and NCBI gene (in R) by James W. MacDonald 64k

I already showed you how to do this for gene symbols, and it's analogous for any other annotation ID. Please see the `AnnotationDbi` [vigne…

Comment: Obtaining rsIDs with ENSG and variant ID information by Robert Castelo ★ 3.0k

This is a large package, and when downloading and installing large packages it's often the case to get timeouts. Try setting a longer time …

Comment: How does Deseq2 deal with the row with zero when calculating size factors by ATpoint ★ 3.6k

> Because I found that if there is at least one gene without zero among all of the samples, the deseq2 runs smoothly. No, it doesn't. ``…

Votes

Answer: RNASeq time course analysis, missing time points for control

Answer: biomaRt not working - lazy table error

Answer: Confused about the CPM and TMM normalization in edgeR

Answer: Differential gene expression analysis

Comment: Why is DMRcate not available for Bioconductor version 3.18?

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