Bioconductor Pipeline

Showing : Pipeline • reset

1

vote

1

reply

389

views

pipeline testdata ChAMP

updated 9 months ago by James W. MacDonald 63k • written 9 months ago by luisfranciscoteves • 0

1 result • Page 1 of 1

Recent ...

Replies

Comment: Biostrings error at retrieving protein sequences by James W. MacDonald 63k

It depends on what kind of whitespace it is. If the whitespace is just a space, then it will work. But if it's a tab, it won't. ``` > gsub…

Comment: Biostrings error at retrieving protein sequences by nromerov • 0

If i write it like ```r gsub(" .*", "", names(protein_sequences)) ``` it will delet all the extra information if it is on the AAString…

Comment: bug in block.plsda from mixOmics? by Lluís Revilla Sancho ▴ 720

Oh, sorry for the noise, I see that just after Bioconductor 3.16 the bug is fixed in both 3.17 and in devel. Thanks for checking.

Answer: Mixed up sample info with plotPCA by Michael Love 40k

I can already tell there is code you aren't showing. For example, your `pcaData` has a variable 'group' that isn't in the previous sample i…

Comment: Biostrings error at retrieving protein sequences by nromerov • 0

Thaks a lot for your help

Votes

Answer: Mouse to Human Genes using bioconductor

Mouse to Human Genes using bioconductor

Answer: How do I merge a list of GRanges?

Awards • All

Popular Question to Guido Hooiveld ★ 3.7k

Popular Question to Rory Stark ★ 5.0k

Locations • All

Seattle, WA, United States, 11 minutes ago

UPF, Barcelona, Spain, 24 minutes ago

MSKCC | New York, NY, 35 minutes ago

United States, 1 hour ago

Traffic: 652 users visited in the last hour

Content Search
Users
Tags
Badges

Help About
FAQ

Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the

version 2.3.6