Showing : Plot • reset
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3.7k
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flowPeaks - plot.new() error due to too many graphs in one R Graphics window
flowpeaks plot
updated 6.6 years ago by 58k • written 6.6 years ago by ▴ 10
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votes
2
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2.7k
views
Plots and Heat Maps not displaying in RGui Window
plot heatmap graphical rnaseqgene deseqdataset
6.4 years ago greg.mulhearn • 0
0
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4
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2.0k
views
heatmap.2 like plot in ggplot
plot
updated 6.9 years ago by 58k • written 6.9 years ago by ▴ 120
0
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1
reply
1.7k
views
How can I create a mean ROC curve for multiple plotted ROC curves, R
R ROC mean plot multiple roc curves
updated 3.0 years ago by ▴ 390 • written 3.0 years ago by • 0
1
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3
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1.6k
views
Combining LD matrix plot with SNP and gene data with ggplot / ggbio tracks() function
ggplot2 ggbio plot tracks bioconductor
updated 4.6 years ago by 11k • written 4.6 years ago by ▴ 10
11
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15
replies
1.5k
views
edgeR - MDS Plot for Count Data
edger DEG mds plot
4.1 years ago • updated 4.0 years ago baus87 • 0
4
votes
1
reply
1.3k
views
gviz: add horizontal line to DataTrack object
bioconductor gviz plot horizontal line
updated 5.2 years ago by ★ 1.6k • written 5.2 years ago by ▴ 10
1
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2
replies
1.2k
views
Manhattan plot from ChAMP data
champ plot manhattan plot
updated 4.5 years ago by ▴ 90 • written 4.5 years ago by ▴ 10
0
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5
replies
1.1k
views
R plot error
r bioconductor graph plot data representation in graphical forms
6.3 years ago megha.24may • 0
2
votes
2
replies
1.1k
views
Ploting with NA values in Gviz (generic function from plot)
Gviz Plot NA graph Job
updated 6.1 years ago by 58k • written 6.1 years ago by ▴ 40
1
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2
replies
1.0k
views
"confint" type in DataTrack function (Gviz)
Gviz plot confidence interval
updated 6.1 years ago by ★ 1.6k • written 6.1 years ago by ▴ 40
2
votes
3
replies
952
views
ggbio tracks() function handling x axis in the wrong way
ggbio ggplot2 tracks genomics plot
5.0 years ago oswaldo.lorenzo ▴ 10
1
vote
1
reply
919
views
ggplot same data, different plots
ggplot2 ggplot plot
updated 5.6 years ago by 58k • written 5.6 years ago by ▴ 50
1
vote
1
reply
915
views
How to show chromosome position and SNP label at the same time in x axis
ggbio ggplot2 genomics plot
5.0 years ago oswaldo.lorenzo ▴ 10
0
votes
1
reply
908
views
Plotting coverage from bam files
bam plot
updated 3.4 years ago by 58k • written 3.4 years ago by ▴ 40
2
votes
5
replies
832
views
rlog, lfcShrink and vst on gene subset
deseq2 subsetting plot
updated 3.3 years ago by 34k • written 3.3 years ago by ▴ 10
0
votes
6
replies
812
views
expression correlation on an ExpressionSet
ExpressionSet caseControl Correlation Plot
updated 4.3 years ago by • 0 • written 4.6 years ago by • 0
0
votes
1
reply
788
views
Ringo Plots Only Partially Made
Ringo affy tilingarray plot starr
6.2 years ago bruce.moran ▴ 30
2
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2
replies
778
views
Anyone know how to make a plot like this - I don't even know what it's called.
plot ggplot2
updated 5.2 years ago by ▴ 130 • written 5.2 years ago by ▴ 10
0
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1
reply
728
views
ConsensusClusterPlus - function "calcICL" - How the samples are ordered in the plots???
ConsensusClusterPlus calcICL plot
4.8 years ago • updated 4.4 years ago juan-pablo.cerapio-arroyo ▴ 10
0
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1
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724
views
Save multiple plots into single pdf from Deseq2 analysis?
plot pdf dev.off
updated 4.3 years ago by 13k • written 4.3 years ago by • 0
0
votes
1
reply
706
views
lumi: can't see sample corr pairwise and MAplot plots
lumi plot
updated 6.6 years ago by 43k • written 6.6 years ago by ▴ 100
2
votes
4
replies
699
views
ggbio tracks () does not allow "call" class in the "main" slot of the function
ggbio ggplot2 call plot
updated 4.7 years ago by 11k • written 4.7 years ago by ▴ 10
0
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0
replies
632
views
GenomeGraphs, modify Y axis
genomegraphs biomart plot graphics
6.0 years ago koenhendriks89 • 0
0
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0
replies
607
views
changing the plot type in minet package
minet plot
5.5 years ago Angel ▴ 40
0
votes
3
replies
600
views
Adding gene names which are differentially expressed in the plot
edgeR plot differential gene expression
3.9 years ago fawazfebin ▴ 30
0
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0
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576
views
Plotting DataTrack for non-model organism.
Gviz plot chipseq
4.0 years ago anupriyaverma1408 • 0
2
votes
2
replies
521
views
Change legend names when using plotBCV
edger plot Tutorial
updated 3.1 years ago by 43k • written 3.1 years ago by • 0
0
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0
replies
513
views
Plotting False discoveries vs genes selected
plot
5.2 years ago humberto_munoz • 0
0
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5
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490
views
How can I remove the row and column labels/names in the plot() or dba.plotHeatmap() while plotting correlation matrix using diffbind?
Diffbind plot heatmap.3
updated 2.1 years ago by ★ 4.1k • written 2.1 years ago by • 0
0
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1
reply
487
views
SC3 how to customize plots ?
SC3 plot consensus marker heatmap
updated 2.7 years ago by ▴ 150 • written 2.8 years ago by • 0
2
votes
1
reply
484
views
Plotting Gene Expression Data From Multiple Batches
batch effect microarray plot
updated 4.2 years ago by ★ 2.0k • written 4.2 years ago by ▴ 40
1
vote
2
replies
478
views
clusterporfiler enrichGO plot
clusterprofiler gene ontology plot
updated 12 months ago by ▴ 10 • written 12 months ago by • 0
1
vote
2
replies
390
views
Obtain the first gene expression heatmaps from GOexpress package gene ontology enrichment analysis results
GOexpress heatmap gene ontology plot
updated 23 months ago by ▴ 300 • written 23 months ago by • 0
0
votes
1
reply
371
views
plot get overridden rather to overlapped
rsamtools ggplot2 plot
updated 2.8 years ago by 58k • written 2.8 years ago by • 0
1
vote
3
replies
352
views
copy number variation analysis (CNV)
copynumber plot visualization NGS gene
updated 9 months ago by ▴ 90 • written 11 months ago by • 0
0
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3
replies
333
views
Change color of Diffbind's PCA and clustered heatmap plot()
DiffBind plot color
updated 20 months ago by ★ 4.1k • written 22 months ago by ▴ 10
0
votes
2
replies
300
views
Can we control colors for two different colAtributes
diffbind plot plotHeatmap
updated 2.1 years ago by ★ 4.1k • written 2.1 years ago by • 0
0
votes
1
reply
258
views
How to create a violin plot
plot ggcyte
updated 23 months ago by 3.4k • written 23 months ago by • 0
0
votes
1
reply
258
views
Can we change the name of the ColAttributes in the image generated by dba.plotHeatmap?
DiffBind plot plotHeatmap dba.plotHeatmap
updated 2.1 years ago by ★ 4.1k • written 2.1 years ago by • 0
0
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9
replies
246
views
Plotting change over time
deseq2 Plot
updated 17 months ago by 34k • written 17 months ago by • 0
0
votes
2
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238
views
Error in (function (classes, fdef, mtable) : unable to find an inherited method for function ‘plotPCA’ for signature ‘"prcomp"’
plotGrouper DESeq2 plot
updated 7 months ago by ▴ 830 • written 7 months ago by • 0
0
votes
2
replies
237
views
Correlation plot how to improve?
plot correlation
23 months ago annkolman78 • 0
2
votes
2
replies
221
views
[dba.plotvenn] Can I move around the numbers in the diagram so that they fit inside the overlapped region?
diffbind plot venn diagram
updated 11 months ago by ★ 4.1k • written 11 months ago by • 0
0
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1
reply
205
views
I am using the DEP package example dataset, and I am getting this error on: plot_frequency(data_se)
DEP R Bioconductor Plot
updated 10 months ago by 2.8k • written 10 months ago by • 0
0
votes
1
reply
171
views
two tracks have the same axis
plot Gviz
10 months ago 腾 • 0
0
votes
0
replies
146
views
Problems with cummeRbund
plot transcriptomics differential expression cummeRbund
17 months ago raquelponti • 0
0
votes
0
replies
118
views
Gviz: set colors for UTRs
plot color Gviz utr
5 months ago ginlucks • 0
0
votes
2
replies
110
views
AlignmentsTrack empty plot
Coverage RNASeq plot Gviz
6 weeks ago karlaarz • 0
49 results • Page 1 of 1
Recent ...
Replies
Answer: Error in makeTxDbFromGFF(txomeInfo$gtf) by Michael Love 34k
I see that tximeta found a linked transcriptome. Can you show this part of your code as well? How did you create the `linkedTxome`?
Comment: EdgeR, tumor normal pair, no replicatie but multiple patients, to focus on indi by Gordon Smyth 43k
You need to start by doing an ordinary paired analysis.
Comment: Recalculated abundance data output table with DEseq2 by Michael Love 34k
Yes, DESeq() then results(). When you print the table it will say MLE. No we don’t have a function to do that.
Comment: Recalculated abundance data output table with DEseq2 by michael.morash • 0
Thanks for getting back to me so quickly. The final comparison we are looking to report are the effects of filtering out low count genes us…
Comment: EdgeR, tumor normal pair, no replicatie but multiple patients, to focus on indi by Field -Ye • 0
Hi Professor Smyth, Thank you for pointing me to your previous publication. I went through the verbal part and found you did pursue the DG…
Votes
Answer: Degust: what normalization method does it use
Answer: ylim and xlim in Enhanced Volcano
Answer: EdgeR, tumor normal pair, no replicatie but multiple patients, to focus on indi
Error in .rowNamesDF<-(x, value = value) :duplicate row.names are not allowed DESeq2
Comment: How to build a GRangesList where each GRanges element is a CDS coordinate of gen
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