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PolyPhen
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Help with installing Biocmanager
pd.rabgene.1.0.st
PolyPhen
updated 2.3 years ago by
ATpoint
★ 4.0k • written 2.3 years ago by
cyb.95521
• 0
0
votes
2
replies
2.2k
views
ensemblVEP, variant_effect_predictor versions and release schedule
Transcription
HapMap
PolyPhen
SIFT
convert
genomes
ensemblVEP
Transcription
HapMap
SIFT
updated 10.3 years ago by
Valerie Obenchain
★ 6.8k • written 10.3 years ago by
Thomas Sandmann
▴ 30
0
votes
0
replies
1.2k
views
zero-row result breaks select() on PolyPhen.Hsapiens.* and SIFT.Hsapiens.*
VariantAnnotation
Annotation
PolyPhen
SIFT
annotate
VariantAnnotation
ensemblVEP
Annotation
10.4 years ago
Valerie Obenchain
★ 6.8k
0
votes
4
replies
1.3k
views
zero-row result breaks select() on PolyPhen.Hsapiens.* and SIFT.Hsapiens.*
Annotation
PolyPhen
SIFT
Annotation
PolyPhen
SIFT
updated 10.6 years ago by
Valerie Obenchain
★ 6.8k • written 10.6 years ago by
Robert Castelo
★ 3.3k
0
votes
0
replies
1.1k
views
Useful information about Ensembl release 72 mart databases
PolyPhen
PolyPhen
10.9 years ago
Thomas Maurel
▴ 800
0
votes
0
replies
1.5k
views
Useful information about Ensembl release 71 mart databases
zebrafish
PolyPhen
SIFT
affy
genomes
zebrafish
PolyPhen
SIFT
affy
genomes
11.0 years ago
Thomas Maurel
▴ 800
0
votes
1
reply
1.4k
views
Useful information about Ensembl release 67 mart databases
miRNA
GO
Caenorhabditis elegans
Sus scrofa
zebrafish
PolyPhen
SIFT
miRNA
GO
Sus scrofa
11.9 years ago
Thomas Maurel
▴ 800
7 results • Page
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Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
James W. MacDonald
65k
That's an assumption used for normalization of a sample, not an assumption you can use for an individual model. We always normalize to atte…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
SamGG
▴ 350
Is useless the assumption that the majority of genes have no variation in expression (bearing in mind that they are distributed over the en…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
Alexandre
• 0
Hello James, Thank you for your answer and precise exemple ! It is disappointing but makes sense. Best, Alexandre
Comment: How to retrieve gene ontology GO class from gene list?
by
James W. MacDonald
65k
Yes. The `keys` argument to both `select` and `mapIds` will accept a vector (see `?select` for more information). Also, the [vignette][1] f…
Comment: How to retrieve gene ontology GO class from gene list?
by
bandconductor
• 0
Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…
Votes
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
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