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PolyPhen
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Help with installing Biocmanager
pd.rabgene.1.0.st
PolyPhen
updated 2.2 years ago by
ATpoint
★ 4.0k • written 2.2 years ago by
cyb.95521
• 0
0
votes
2
replies
2.1k
views
ensemblVEP, variant_effect_predictor versions and release schedule
Transcription
HapMap
PolyPhen
SIFT
convert
genomes
ensemblVEP
Transcription
HapMap
SIFT
updated 10.2 years ago by
Valerie Obenchain
★ 6.8k • written 10.2 years ago by
Thomas Sandmann
▴ 30
0
votes
0
replies
1.2k
views
zero-row result breaks select() on PolyPhen.Hsapiens.* and SIFT.Hsapiens.*
VariantAnnotation
Annotation
PolyPhen
SIFT
annotate
VariantAnnotation
ensemblVEP
Annotation
10.3 years ago
Valerie Obenchain
★ 6.8k
0
votes
4
replies
1.3k
views
zero-row result breaks select() on PolyPhen.Hsapiens.* and SIFT.Hsapiens.*
Annotation
PolyPhen
SIFT
Annotation
PolyPhen
SIFT
updated 10.5 years ago by
Valerie Obenchain
★ 6.8k • written 10.5 years ago by
Robert Castelo
★ 3.1k
0
votes
0
replies
1.1k
views
Useful information about Ensembl release 72 mart databases
PolyPhen
PolyPhen
10.8 years ago
Thomas Maurel
▴ 800
0
votes
0
replies
1.5k
views
Useful information about Ensembl release 71 mart databases
zebrafish
PolyPhen
SIFT
affy
genomes
zebrafish
PolyPhen
SIFT
affy
genomes
11.0 years ago
Thomas Maurel
▴ 800
0
votes
1
reply
1.4k
views
Useful information about Ensembl release 67 mart databases
miRNA
GO
Caenorhabditis elegans
Sus scrofa
zebrafish
PolyPhen
SIFT
miRNA
GO
Sus scrofa
11.9 years ago
Thomas Maurel
▴ 800
7 results • Page
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Comment: error when using M-values in ChAMP
by
hortenseguillaume96
• 0
Hello Tian, I'd like to get the M-values matrix so that I can carry out a linear regression study. However, when I apply the champ.load fu…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Votes
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
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Robert Castelo
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