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Polyester
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1.8k
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Using Polyester to simulate large number of reads from a large transcriptome
polyester
rnaseq
updated 7.9 years ago by
jmfu
▴ 10 • written 7.9 years ago by
aditya892
• 0
2
votes
1
reply
1.4k
views
polyester: adding noise to RNASeq counts?
rnaseq
polyester
updated 7.8 years ago by
Alyssa Frazee
▴ 210 • written 7.8 years ago by
krishna312
• 0
0
votes
2
replies
1.4k
views
How to simulate a count matrix using Polyester
simulation
count matrix
RNA-seq
Polyester
updated 6.3 years ago by
Alyssa Frazee
▴ 210 • written 6.3 years ago by
fa.gholizadeh89
• 0
0
votes
1
reply
410
views
polyester biases
polyester
updated 11 months ago by
Michael Love
41k • written 11 months ago by
Seongwoo Han
▴ 10
0
votes
2
replies
1.5k
views
RNA-seq read simulation for benchmarking differential expression/splicing variance
polyester
simulation
RNA-seq
syntheticdata
updated 3.4 years ago by
Gordon Smyth
50k • written 3.4 years ago by
Endre Sebestyén
▴ 70
1
vote
0
replies
587
views
Polyester's simulate_experiment man pages / vignette description
polyester
4.5 years ago
Michael Love
41k
0
votes
0
replies
594
views
Polyester - simulate_experiment_countmat with gtf
polyester
4.0 years ago
liorglic
▴ 10
0
votes
0
replies
1.1k
views
Polyester - creating simulated reads based on raw count matrix
polyester
rnaseq
simulation
6.7 years ago
sseo2
• 0
0
votes
1
reply
662
views
Error message
polyester
updated 3.2 years ago by
shepherl
3.8k • written 3.2 years ago by
avaniknejad686
• 0
0
votes
0
replies
442
views
polyester running question
polyester
17 months ago
Seongwoo Han
▴ 10
0
votes
0
replies
545
views
Range value of the dispersion parameters (a1, alpha 0 and sigmad)
polyester
dispersion
updated 3.0 years ago by
Michael Love
41k • written 3.0 years ago by
catalina.gonzalez-gomez
• 0
0
votes
0
replies
969
views
Could an experienced user of Polyester help me with some questions?
rna-seq
polyester
simulation
time course
6.3 years ago
fa.gholizadeh89
• 0
12 results • Page
1 of 1
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Comment: FilterByExpr low counts with small sample size
by
Gordon Smyth
50k
As always, it helps to see code. Are you running `voom` or `voomLmFit`? Did you run `normLibSizes()` in edgeR prior to `voom`? Are you star…
Comment: Batch correction and repeated measures
by
Gordon Smyth
50k
In your code, it was clear that `expr.mat` was a matrix rather than a DGEList, so it has to be a count matrix. If you have a DGEList object…
Comment: Methylation Analysis experiment design using Limma
by
Gordon Smyth
50k
I don't analyse methylation arrays so cannot advise on specific limma settings for that type of data. Please follow the advice of the methy…
Comment: Light difference when using coef vs omit a group when compare 3 groups.
by
Chris
• 0
Hi Gordon, thank you so much for further guidance! I discussed this issue with doctor know about Alzheimer and they don't expect significan…
Comment: Single-Cell Data Simulation from Bulk RNA-seq
by
wichaidi
• 0
Hi - I am wondering what you decided to do. I am currently in a similar condition where I need to create a toy scRNAseq data from bulk.
Votes
Answer: How many of my genes from my gene list are in each KEGG pathway?
Comment: Light difference when using coef vs omit a group when compare 3 groups.
DESeq2 variance transformation error and plot dispersion Estimate
A: DESeq2 variance transformation error and plot dispersion Estimate
ensembl to hgnc symbols creates duplicates
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