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Prostar
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Problems with Prostar v1.26.4 - issue with convert data prior to filtering
Prostar
2.2 years ago
benoit.marchand
• 0
1
vote
5
replies
1.1k
views
Need help for ProStaR Stand-alone install
Prostar
updated 23 months ago by
Wang
• 0 • written 2.4 years ago by
benoit.marchand
• 0
0
votes
0
replies
730
views
Extracting p-value table in Prostar
prostar
proteomics
5.9 years ago
laural710
• 0
1
vote
3
replies
1.3k
views
Running GO analysis via Prostar
prostar
proteomics
rforproteomics
annotationforge
updated 5.9 years ago by
Samuel Wieczorek
▴ 10 • written 5.9 years ago by
lolli.langan
▴ 20
0
votes
3
replies
1.2k
views
Prostar (query on GO analysis)
Prostar
Dapar
clusterprofiler
updated 6.0 years ago by
Samuel Wieczorek
▴ 10 • written 6.0 years ago by
laural710
• 0
0
votes
1
reply
1.0k
views
Prostar and DAPAR installation
install error
package installation
DAPAR
prostar
R version 3.4.4
6.0 years ago
rita.reig
• 0
0
votes
2
replies
1.4k
views
Query regarding Prostar
Prostar
updated 6.5 years ago by
Samuel Wieczorek
▴ 10 • written 7.5 years ago by
kamal.fartiyal84
▴ 10
0
votes
3
replies
1.3k
views
ProStaR Not working, gives error in code?
Prostar
DAPAR
software error
updated 6.5 years ago by
Samuel Wieczorek
▴ 10 • written 6.5 years ago by
van.theodorakis
• 0
8 results • Page
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Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
James W. MacDonald
65k
Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
Alexandre
• 0
Hello James, Thank you very much for your answer and taking the time to read my post. I understand your remark, but isn't the approach o…
Comment: PCA plot suggestions
by
JKim
• 0
cross post: https://www.biostars.org/p/9593486/
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
James W. MacDonald
65k
You cannot correct for technical variability due to batch if samples are nested in batch. The technical and biological differences are comp…
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
James W. MacDonald
65k
You will need to show some reproducible code for anybody to track this down. Please note that `DESeq2` has been used by thousands of people…
Votes
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
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