Bioconductor Protein

Showing : Protein • reset

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2.5k

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STRINGdb R protein

updated 4.9 years ago by zhanghongjie000 • 0 • written 5.1 years ago by shahroze786 • 0

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1.3k

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biostrings iranges sequence alignment protein

updated 7.2 years ago by Michael Lawrence ★ 11k • written 7.2 years ago by Assa Yeroslaviz ★ 1.5k

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1.1k

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microarray normalization protein

updated 3.5 years ago by Wolfgang Huber ★ 13k • written 4.9 years ago by keniajin • 0

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889

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microarray protein analysis ProteomeProfiler

updated 4.1 years ago by Gordon Smyth 50k • written 4.1 years ago by hcnbox • 0

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1.2k

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Gviz protein visualization UcscTrack protein domains

updated 3.6 years ago by James W. MacDonald 65k • written 3.6 years ago by paul.jaschke ▴ 10

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1.4k

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iranges biostrings fasta protein readaastringset

updated 7.5 years ago by Michael Lawrence ★ 11k • written 7.5 years ago by Assa Yeroslaviz ★ 1.5k

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2.1k

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biostrings fasta protein

updated 7.3 years ago by James W. MacDonald 65k • written 7.3 years ago by fastabest • 0

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2.2k

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xcms convert protein

updated 7.4 years ago by Johannes Rainer ★ 2.0k • written 7.4 years ago by ray.bacala • 0

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460

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protein database glutathionylation PTM

2.8 years ago Camelia • 0

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1.2k

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bioinformatics protein variantannotation data integration Job

7.4 years ago stephan.pabinger • 0

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918

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R blast blastsequences protein

6.2 years ago andres.susrud • 0

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1.1k

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dnaseq pathway analysis protein biomarkers

6.2 years ago emadelhewihy • 0

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982

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protein disease pathway analysis pathways

5.8 years ago ረ • 0

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821

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Protein iranges sequencing

5.1 years ago ieuangw • 0

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1.7k

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protein vcf

9.0 years ago dan.gatti • 0

15 results • Page 1 of 1

Recent ...

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Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0

Hello James, Thank you very much for your answer and taking the time to read my post. I understand your remark, but isn't the approach o…

Comment: PCA plot suggestions by JKim • 0

cross post: https://www.biostars.org/p/9593486/

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k

You cannot correct for technical variability due to batch if samples are nested in batch. The technical and biological differences are comp…

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by James W. MacDonald 65k

You will need to show some reproducible code for anybody to track this down. Please note that `DESeq2` has been used by thousands of people…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0

My code for the sessionInfo() . If the pictures are too big, I will downsize them. THank you again for reading my post ! ```r > sessionInf…

Votes

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

Answer: Use of negative binomial model for exponential decay rate estimation using DESeq

C: null model and DEXSeqDataSet object in DEXSEQ

A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?

A: How to explain how DESeq2 works to someone with zero bioinformatics background?

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0