Bioconductor Proteome

Showing : Proteome • reset

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189

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Proteomics ProteoMM ProteomicsWorkflow Proteome

written 4 months ago by ary.lech ▴ 10

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753

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SequenceMatching Biostrings DifferentialExpression Proteome

updated 6 months ago by Hervé Pagès 16k • written 6 months ago by nromerov • 0

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474

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Proteome ProtGenerics

written 19 months ago by bansalheena10 • 0

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554

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Proteomics Proteome

updated 19 months ago by ATpoint ★ 4.0k • written 19 months ago by bansalheena10 • 0

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741

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shotgunproteomics Proteome proteomics Proteomics ProteoMM

2.1 years ago ary.lech ▴ 10

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3.1k

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MassSpectrometryData Proteome Database DEP

3.1 years ago tpm • 0

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1.5k

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ProteomicsWorkflow proteomics Proteome

3.4 years ago info ▴ 10

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1.0k

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Proteome ProteomicsWorkflow proteomics

updated 3.4 years ago by swbarnes2 ★ 1.3k • written 3.4 years ago by yueli7 ▴ 20

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2.4k

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Genetics Normalization Proteome DESeq Genetics Normalization Proteome DESeq

updated 12.7 years ago by Davis McCarthy ▴ 20 • written 12.7 years ago by mali salmon ▴ 370

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804

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Proteome Proteome

14.5 years ago Tillinghast, Guy, M.D. ▴ 30

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1.6k

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Proteome Proteome

updated 16.7 years ago by Mª José Nueda ▴ 90 • written 16.7 years ago by simonegri@alice.it ▴ 20

11 results • Page 1 of 1

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Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR) by Michael Love 41k

> I got many p values that had "1.000000e+00" and padj "1" and stat of "0" when I added the Log threshold of LFC >1 and LFC < -1...is this …

Comment: Trying to use enrichGO by fernanda.backsouza ▴ 10

With all my love, thank you Guido, GOxploreR beeing a big ally for me. I don't know how to be grateful right now.

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.

Answer: Opposite sign of LFC in count plots of DEGs (DESeq2) by swbarnes2 ★ 1.3k

Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…

Comment: get BM error by James W. MacDonald 65k

I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…

Votes

Answer: How to retrieve gene ontology GO class from gene list?

C: when to apply quantile normalization with voom in limma/voom framework with RNA-

A: How to know if I should use voomWithQualityWeights() or not?

A: Weird results (ribosomal proteins / Y-linked genes) in limma/voom

Awards • All

Teacher to Gordon Smyth 50k