Showing : Proteome • reset
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mRNA-seq cross-species analysis, is it possible?
Genetics Normalization Proteome DESeq Genetics Normalization Proteome DESeq
updated 12.7 years ago by ▴ 20 • written 12.7 years ago by ▴ 370
2
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6
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744
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Biostrings error at retrieving protein sequences
SequenceMatching Biostrings DifferentialExpression Proteome
updated 6 months ago by 16k • written 6 months ago by • 0
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2
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1.6k
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I: Two way anova or manova?
Proteome Proteome
updated 16.7 years ago by ▴ 90 • written 16.7 years ago by ▴ 20
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1
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465
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catagorization of proteins
Proteome ProtGenerics
written 19 months ago by • 0
1
vote
7
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3.1k
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How can I convert the "Majority protein IDs" to "Gene names" (example below shown)?
MassSpectrometryData Proteome Database DEP
3.1 years ago tpm • 0
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801
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BSgenome data package of the human proteome: Does it exist?
Proteome Proteome
14.5 years ago Tillinghast, Guy, M.D. ▴ 30
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1
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1.0k
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R package to change protein *.msf file to any readable file
Proteome ProteomicsWorkflow proteomics
updated 3.4 years ago by ★ 1.3k • written 3.4 years ago by ▴ 20
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1
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183
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analysis of overexpressed proteins in metaproteomes
Proteomics ProteoMM ProteomicsWorkflow Proteome
written 4 months ago by ▴ 10
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0
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730
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ProteoMM analysis with two replicates
shotgunproteomics Proteome proteomics Proteomics ProteoMM
2.1 years ago ary.lech ▴ 10
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547
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Outliers
Proteomics Proteome
updated 19 months ago by ★ 4.0k • written 19 months ago by • 0
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News: Online training - Proteomics in R and Bioconductor
ProteomicsWorkflow proteomics Proteome
3.4 years ago info ▴ 10
11 results • Page 1 of 1
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Comment: significant difference of p-values with dream() after updating VariancePartition by gabriel.hoffman ▴ 100
See variancePartition updates for [v1.33.11](https://diseaseneurogenomics.github.io/variancePartition/news/index.html#variancepartition-133…
Comment: A ComBat-seq issue: the covariates are confounded by W. Evan Johnson ▴ 850
This is only partially confounded because there is overlap between the batches -- they both have GFP controls that can be used to remove ba…
Answer: Different number of exons in reference genome affects DEXSeq analysis by Alejandro Reyes ★ 1.9k
Likely the new annotation that you are using has more annotated isoforms, and thus the exons are splitted into more disjoint exonic bins. I…
Answer: Adding columns to DEXSeqResults object by Alejandro Reyes ★ 1.9k
I'd have a look into the match function, that could give you a mapping between the ids in the dxr1 object and your data frame of gene symbo…
Answer: rlog transformation by Michael Love 41k
It is dependent on the other samples in the dataset.
Votes
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos
Using GRanges and IRanges to simply get all chromosome data
A: Using GRanges and IRanges to simply get all chromosome data
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