Showing : Proteome • reset
1
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7
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How can I convert the "Majority protein IDs" to "Gene names" (example below shown)?
MassSpectrometryData Proteome Database DEP
3.1 years ago tpm • 0
0
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5
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2.4k
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mRNA-seq cross-species analysis, is it possible?
Genetics Normalization Proteome DESeq Genetics Normalization Proteome DESeq
updated 12.7 years ago by ▴ 20 • written 12.7 years ago by ▴ 370
0
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2
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1.6k
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I: Two way anova or manova?
Proteome Proteome
updated 16.7 years ago by ▴ 90 • written 16.7 years ago by ▴ 20
1
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0
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1.5k
views
News: Online training - Proteomics in R and Bioconductor
ProteomicsWorkflow proteomics Proteome
3.4 years ago info ▴ 10
0
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1
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1.0k
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R package to change protein *.msf file to any readable file
Proteome ProteomicsWorkflow proteomics
updated 3.4 years ago by ★ 1.3k • written 3.4 years ago by ▴ 20
0
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0
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804
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BSgenome data package of the human proteome: Does it exist?
Proteome Proteome
14.5 years ago Tillinghast, Guy, M.D. ▴ 30
2
votes
6
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753
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Biostrings error at retrieving protein sequences
SequenceMatching Biostrings DifferentialExpression Proteome
updated 6 months ago by 16k • written 6 months ago by • 0
0
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0
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741
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ProteoMM analysis with two replicates
shotgunproteomics Proteome proteomics Proteomics ProteoMM
2.1 years ago ary.lech ▴ 10
0
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0
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555
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Outliers
Proteomics Proteome
updated 19 months ago by ★ 4.0k • written 19 months ago by • 0
0
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1
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474
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catagorization of proteins
Proteome ProtGenerics
written 19 months ago by • 0
0
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1
reply
189
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analysis of overexpressed proteins in metaproteomes
Proteomics ProteoMM ProteomicsWorkflow Proteome
written 4 months ago by ▴ 10
11 results • Page 1 of 1
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Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR) by Michael Love 41k
> I got many p values that had "1.000000e+00" and padj "1" and stat of "0" when I added the Log threshold of LFC >1 and LFC < -1...is this …
Comment: Trying to use enrichGO by fernanda.backsouza ▴ 10
With all my love, thank you Guido, GOxploreR beeing a big ally for me. I don't know how to be grateful right now.
Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k
You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.
Answer: Opposite sign of LFC in count plots of DEGs (DESeq2) by swbarnes2 ★ 1.3k
Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…
Comment: get BM error by James W. MacDonald 65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
Votes
Answer: How to retrieve gene ontology GO class from gene list?
Answer: How to retrieve gene ontology GO class from gene list?
C: when to apply quantile normalization with voom in limma/voom framework with RNA-
A: How to know if I should use voomWithQualityWeights() or not?
A: Weird results (ribosomal proteins / Y-linked genes) in limma/voom
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