Bioconductor Proteomics

Showing : Proteomics • reset

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3.7k

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Proteomics NPX limma

updated 12 weeks ago by briankleiboeker • 0 • written 3.1 years ago by r.i.s.alnuwaysir ▴ 10

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2.9k

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differential expression proteomics

updated 7 months ago by ATpoint ★ 4.0k • written 6.3 years ago by cardin.julie • 0

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2.2k

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mass spectrometry proteomics metabolomics Tutorial

written 3.5 years ago by Johannes Rainer ★ 2.0k

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1.7k

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Proteomics DEP limma

written 2.8 years ago by barrypraveen • 0

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1.4k

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RNAseq deseq2 proteomics transcriptomics workshop News

written 5.1 years ago by Laurent Gatto 1.6k

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742

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Proteomics ProteoMM ProteomicsWorkflow

updated 8 months ago by mmvar • 0 • written 10 months ago by nkvnambiar • 0

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704

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RforProteomics Proteomics ProteomicsWorkflow

updated 8 months ago by Laurent Gatto 1.6k • written 8 months ago by mmvar • 0

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685

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Proteomics proDA MultipleComparison

7 months ago t.b.n.nguyen-9 • 0

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574

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Proteomics RforProteomics ProteomicsWorkflow Spectra MassSpectrometryData

updated 8 months ago by Laurent Gatto 1.6k • written 8 months ago by mmvar • 0

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436

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Proteomics DifferentialRegulation limma

7 months ago svlachavas ▴ 830

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219

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Bioconductor Proteomics

4 months ago Joshua • 0

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184

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Proteomics ProteoMM ProteomicsWorkflow Proteome

written 4 months ago by ary.lech ▴ 10

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183

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Proteomics JobPosting SingleCell Spatial SpatialExperiment

6 weeks ago Peter Hickey ▴ 740

13 results • Page 1 of 1

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Answer: OrgDb for maize by Guido Hooiveld ★ 3.9k

I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …

Comment: Theoretical WGCNA Question by Garrett • 0

Thanks Peter!

Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0

Thank you!

Comment: FGSEA pre-ranked input in increasing order or decreasing by alserg ▴ 240

They are reorder in the decreasing order.

Comment: significant difference of p-values with dream() after updating VariancePartition by Le • 0

Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…

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Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

Comment: DEXSeq DEXSeqDataSet count matrix duplication

Comment: Error in champ.load(): The following specified files do not exist

Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos

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Scholar to Peter Hickey ▴ 740