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Proteomics
•
reset
0
votes
0
replies
182
views
Job:
Bioinformatics Spatial Omics and Proteomics Postdoc (Research Officer / Senior Research Officer) at WEHI (Melbourne, Australia)
Proteomics
JobPosting
SingleCell
Spatial
SpatialExperiment
6 weeks ago
Peter Hickey
▴ 740
0
votes
1
reply
183
views
analysis of overexpressed proteins in metaproteomes
Proteomics
ProteoMM
ProteomicsWorkflow
Proteome
written 4 months ago by
ary.lech
▴ 10
0
votes
0
replies
218
views
Normalising processed Proteomics data in R
Bioconductor
Proteomics
4 months ago
Joshua
• 0
1
vote
4
replies
682
views
How to find differentially expressed proteins from multiple conditions (>2) using proDA?
Proteomics
proDA
MultipleComparison
7 months ago
t.b.n.nguyen-9
• 0
1
vote
0
replies
435
views
Differential abundance analysis of phosphoproteomics data with multiple time points and conditions
Proteomics
DifferentialRegulation
limma
7 months ago
svlachavas
▴ 830
3
votes
4
replies
2.9k
views
Protein differential Expression analysis
differential expression
proteomics
updated 7 months ago by
ATpoint
★ 4.0k • written 6.3 years ago by
cardin.julie
• 0
0
votes
1
reply
574
views
R for Mass Spectrometry: Precursor Scan Number lost when converting .wiff to .mzML?
Proteomics
RforProteomics
ProteomicsWorkflow
Spectra
MassSpectrometryData
updated 8 months ago by
Laurent Gatto
1.6k • written 8 months ago by
mmvar
• 0
0
votes
5
replies
704
views
R for Mass Spectrometry: PSMatch package won't read .mzid file exported from ProteinPilot?
RforProteomics
Proteomics
ProteomicsWorkflow
updated 8 months ago by
Laurent Gatto
1.6k • written 8 months ago by
mmvar
• 0
0
votes
2
replies
740
views
Proteomics data with NA values
Proteomics
ProteoMM
ProteomicsWorkflow
updated 8 months ago by
mmvar
• 0 • written 10 months ago by
nkvnambiar
• 0
0
votes
2
replies
1.3k
views
biomaRt to match UniProt protein IDs with protein names
Proteomics
UniProtKeywords
updated 13 months ago by
James W. MacDonald
65k • written 13 months ago by
a.a.houfani
• 0
0
votes
0
replies
622
views
Job:
Open position in the CBIO lab: single-cell proteomics
Proteomics
SingleCell
JobPosting
MassSpectrometry
13 months ago
Laurent Gatto
1.6k
0
votes
0
replies
603
views
Job:
Open position in the CBIO lab: spatial proteomics and PTMs
pRoloc
proteomics
Spatial
Proteomics
MassSpectrometry
13 months ago
Laurent Gatto
1.6k
0
votes
0
replies
487
views
News:
Course - R/BIOCONDUCTOR FOR MASS SPECTROMETRY AND PROTEOMICS
Proteomics
R
Bioconductor
MassSpectrometry
13 months ago
info
▴ 10
0
votes
1
reply
814
views
Which software can work withThermo ProteomeDiscover software output?
ProteomicsWorkflow
proteomics
proteinProfiles
updated 13 months ago by
Laurent Gatto
1.6k • written 3.4 years ago by
yueli7
▴ 20
1
vote
3
replies
1.1k
views
Adding ellipse in PCAtools biplot
Biplot
FactoMineR
proteomics
PCAtools
ellipse
updated 15 months ago by
Kevin Blighe
★ 3.9k • written 15 months ago by
M Tuhin
• 0
1
vote
0
replies
558
views
Problem with VSN: Error in vsnML(sv) : L-BFGS-B needs finite values of 'fn'
justvsn
vsn
Normalization
vsn2
Proteomics
15 months ago
Arend
▴ 10
3
votes
3
replies
1.2k
views
Limma repeated-measures model: Partial NA coefficients
Proteomics
limma
repeated-measures
updated 15 months ago by
Gordon Smyth
50k • written 15 months ago by
Luís C.
• 0
0
votes
0
replies
488
views
A question about GWENA R/Bioconductor package
proteomics
GWENA
Proteomics
WGCNA
16 months ago
Abdullah
• 0
0
votes
0
replies
686
views
Job:
PhD Positions in Computational Research, Data Science and Artificial Intelligence at the German Cancer Research Center (DKFZ)
cancer
bioinformatics
proteomics
genomics
phd
17 months ago
DKFZ International PhD Program
▴ 10
1
vote
3
replies
892
views
Proteomics-time series with repeated measures
Proteomics
limma
repeatedmeasures
TimeSeriesExperiment
17 months ago
proteome_AO
• 0
0
votes
5
replies
974
views
Inquiry about suitable package for proteomics study design
Proteomics
design
updated 18 months ago by
evocanres
• 0 • written 18 months ago by
proteome_AO
• 0
0
votes
0
replies
547
views
Outliers
Proteomics
Proteome
updated 19 months ago by
ATpoint
★ 4.0k • written 19 months ago by
bansalheena10
• 0
0
votes
0
replies
471
views
Finding DEGs between two different datasets using limma
Proteomics
limma
proteomi
19 months ago
mfaleevs
• 0
0
votes
3
replies
913
views
Design and contrast matrices for analyzing the effect of two factors of interest on protein expression, controlling for factors and covariates not of…
limma
Proteomics
ProteomicsWorkflow
updated 20 months ago by
Gordon Smyth
50k • written 20 months ago by
samantha.v.goncalves
• 0
1
vote
0
replies
731
views
Job:
Research Fellow in Prostate Cancer Proteomics (Bioinformatics/Stats/Data Analysis) - University of St Andrews
Multiomics
Proteomics
Cancer
Statistics
Bioinformatics
21 months ago
Andy Lynch
▴ 120
0
votes
0
replies
707
views
About normalization of the datasets from Harmonized TCGA data
TCGAbiolinks
Proteomics
GENOMICS
bioinformatics
21 months ago
qiz218591
• 0
2
votes
5
replies
1.7k
views
proteomics analysis
Proteomics
analysis
updated 21 months ago by
jeroen.gilis
▴ 90 • written 21 months ago by
Shakiba
• 0
1
vote
2
replies
915
views
Questions about msqrob2: raw vs LFQ intensities, model design with blocking
msqrob2
ProteomicsWorkflow
proteomics
updated 22 months ago by
Gordon Smyth
50k • written 23 months ago by
Jane
▴ 10
2
votes
1
reply
975
views
Extremely low P-values when using Limma on high sample size proteomics data
limma
Proteomics
updated 23 months ago by
James W. MacDonald
65k • written 23 months ago by
roger.moreno.justicia
• 0
1
vote
0
replies
720
views
Job:
PhD Positions in Computational Research, Data Science and Artificial Intelligence at the German Cancer Research Center (DKFZ)
phd
cancer
genomics
proteomics
bioinformatics
24 months ago
DKFZ International PhD Program
▴ 10
0
votes
0
replies
730
views
ProteoMM analysis with two replicates
shotgunproteomics
Proteome
proteomics
Proteomics
ProteoMM
2.1 years ago
ary.lech
▴ 10
0
votes
2
replies
1.7k
views
Limma Differential Analysis on Proteomics data
Proteomics
limma
Limma
DifferentialExpression
updated 2.2 years ago by
Gordon Smyth
50k • written 2.2 years ago by
Mrinal.singh06
• 0
0
votes
0
replies
744
views
Job:
Tenure-track Group Leader Positions in Computational Biology and Biological Chemistry
bioinformatics
genomics
proteomics
biologicalchemistry
sequencing
2.2 years ago
Robert Castelo
★ 3.2k
0
votes
1
reply
1.8k
views
limma/voom for protein intensity data
limma
proteomics
voom
updated 2.6 years ago by
ATpoint
★ 4.0k • written 2.6 years ago by
Endre Sebestyén
▴ 70
0
votes
1
reply
730
views
How to pull-down gene/protein names from the database search, using R ?
proteinProfiles
ProteomicsWorkflow
ProteomicsAnnotationHubData
Proteomics
updated 2.6 years ago by
Gordon Smyth
50k • written 2.6 years ago by
ALOK
• 0
0
votes
5
replies
1.1k
views
In need of linear modeling help for differential expression (proteomics)
Proteomics
limma
vsn
updated 2.6 years ago by
Gordon Smyth
50k • written 2.6 years ago by
Chris
• 0
0
votes
0
replies
886
views
How to handle the imputation and normalisation?
Proteomics
DEP
limma
2.7 years ago
barrypraveen
• 0
0
votes
1
reply
1.1k
views
How to remove batch effect on DEP protemics package?
Proteomics
DEP
MassSpectrometryData
updated 2.7 years ago by
bigomics.team
• 0 • written 2.7 years ago by
barrypraveen
• 0
0
votes
0
replies
1.7k
views
what is the difference between iBAQ or LFQ?
Proteomics
DEP
limma
written 2.8 years ago by
barrypraveen
• 0
0
votes
4
replies
1.2k
views
How to analyse RNA-based protein pulldown mass spectrometry data
Proteomics
limma
MassSpectrometry
updated 12 months ago by
Gordon Smyth
50k • written 2.8 years ago by
barrypraveen
• 0
5
votes
6
replies
3.7k
views
Differential protein/biomarker expression using limma: is that possible?
Proteomics
NPX
limma
updated 12 weeks ago by
briankleiboeker
• 0 • written 3.1 years ago by
r.i.s.alnuwaysir
▴ 10
6
votes
6
replies
1.6k
views
limma:arrayWeights() and the "prior.n" parameter for biological replicates? (PROTEOMICS)
Proteomics
limma
StatisticalMethod
updated 3.1 years ago by
Gordon Smyth
50k • written 3.1 years ago by
Steve
▴ 10
0
votes
0
replies
930
views
Limma design multi-level experiment with 3 time points
R
proteomics
limma
3.1 years ago
ellen2270
• 0
0
votes
4
replies
1.1k
views
DEP - Run filter_missval() with a threshold ranging from 0 to 3
proteomics
DEP
3.1 years ago
rina
▴ 30
0
votes
0
replies
941
views
Job:
Tenure-track Group Leader Position in Computational Biology
bioinformatics
sequencing
barcelona
proteomics
3.2 years ago
Robert Castelo
★ 3.2k
2
votes
1
reply
3.1k
views
Convert UniProt Entry Names into Gene Symbols
Proteomics
ProteomicsWorkflow
UniProt.ws
updated 3.2 years ago by
James W. MacDonald
65k • written 3.2 years ago by
Dario Strbenac
★ 1.5k
0
votes
0
replies
1.1k
views
Job:
Proteomics Bioinformatician
JobPosting
Proteomics
Statistics
Job
3.3 years ago
Laura
• 0
1
vote
2
replies
1.1k
views
calculate theoretical isotope distribution give the AA sequence
Metabolomics
proteomics
MassSpectrometry
3.3 years ago
Oliver
• 0
0
votes
3
replies
1.1k
views
Why I can not install rTANDEM?
MassSpectrometry
Proteomics
mzR
3.3 years ago
Gilad
• 0
1
vote
2
replies
1.1k
views
error in installation of 'org.Hs.eg.db'
proteomics
GenomicSequence
updated 3.4 years ago by
tcalvo
▴ 90 • written 3.4 years ago by
Eliza
• 0
50 results • Page
1 of 1
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Comment: DESeq2 setting significant p-value
by
Dev
• 0
after running DESeq2 does it sort the value on the basis of pvalue, or anything, or does it give the data back in the input format I have …
Comment: DESeq filtering specific to contrasts
by
Carlin95
• 0
But wouldn't this result in a different gene set for each analysis stratification? How can you then compare if maybe gene x comes up in Tim…
Comment: Reading huge bismark coverage files using bbseq::read.bismark
by
jacques.imbert
• 0
Hello, Using nThread = 1L fixed the issue. Thank you for your time and help.
Comment: Error in champ.load(): The following specified files do not exist
by
Basti
▴ 760
The error stems from the Basename column, please see solution here : https://support.bioconductor.org/p/p132482/
Comment: FilterByExpr low counts with small sample size
by
Gordon Smyth
50k
As always, it helps to see code. Are you running `voom` or `voomLmFit`? Did you run `normLibSizes()` in edgeR prior to `voom`? Are you star…
Votes
Comment: Reading huge bismark coverage files using bbseq::read.bismark
Answer: Reading huge bismark coverage files using bbseq::read.bismark
Answer: Reading huge bismark coverage files using bbseq::read.bismark
Answer: How many of my genes from my gene list are in each KEGG pathway?
Comment: Light difference when using coef vs omit a group when compare 3 groups.
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