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Proteomics
•
reset
0
votes
0
replies
192
views
Job:
Bioinformatics Spatial Omics and Proteomics Postdoc (Research Officer / Senior Research Officer) at WEHI (Melbourne, Australia)
Proteomics
JobPosting
SingleCell
Spatial
SpatialExperiment
7 weeks ago
Peter Hickey
▴ 740
0
votes
1
reply
189
views
analysis of overexpressed proteins in metaproteomes
Proteomics
ProteoMM
ProteomicsWorkflow
Proteome
written 4 months ago by
ary.lech
▴ 10
0
votes
0
replies
225
views
Normalising processed Proteomics data in R
Bioconductor
Proteomics
5 months ago
Joshua
• 0
1
vote
4
replies
708
views
How to find differentially expressed proteins from multiple conditions (>2) using proDA?
Proteomics
proDA
MultipleComparison
7 months ago
t.b.n.nguyen-9
• 0
1
vote
0
replies
440
views
Differential abundance analysis of phosphoproteomics data with multiple time points and conditions
Proteomics
DifferentialRegulation
limma
7 months ago
svlachavas
▴ 830
0
votes
5
replies
715
views
R for Mass Spectrometry: PSMatch package won't read .mzid file exported from ProteinPilot?
RforProteomics
Proteomics
ProteomicsWorkflow
updated 8 months ago by
Laurent Gatto
1.6k • written 9 months ago by
mmvar
• 0
0
votes
1
reply
587
views
R for Mass Spectrometry: Precursor Scan Number lost when converting .wiff to .mzML?
Proteomics
RforProteomics
ProteomicsWorkflow
Spectra
MassSpectrometryData
updated 9 months ago by
Laurent Gatto
1.6k • written 9 months ago by
mmvar
• 0
0
votes
2
replies
760
views
Proteomics data with NA values
Proteomics
ProteoMM
ProteomicsWorkflow
updated 9 months ago by
mmvar
• 0 • written 10 months ago by
nkvnambiar
• 0
0
votes
2
replies
1.3k
views
biomaRt to match UniProt protein IDs with protein names
Proteomics
UniProtKeywords
updated 13 months ago by
James W. MacDonald
65k • written 13 months ago by
a.a.houfani
• 0
0
votes
0
replies
631
views
Job:
Open position in the CBIO lab: single-cell proteomics
Proteomics
SingleCell
JobPosting
MassSpectrometry
13 months ago
Laurent Gatto
1.6k
0
votes
0
replies
615
views
Job:
Open position in the CBIO lab: spatial proteomics and PTMs
pRoloc
proteomics
Spatial
Proteomics
MassSpectrometry
13 months ago
Laurent Gatto
1.6k
0
votes
0
replies
496
views
News:
Course - R/BIOCONDUCTOR FOR MASS SPECTROMETRY AND PROTEOMICS
Proteomics
R
Bioconductor
MassSpectrometry
14 months ago
info
▴ 10
1
vote
3
replies
1.1k
views
Adding ellipse in PCAtools biplot
Biplot
FactoMineR
proteomics
PCAtools
ellipse
updated 15 months ago by
Kevin Blighe
★ 3.9k • written 15 months ago by
M Tuhin
• 0
1
vote
0
replies
564
views
Problem with VSN: Error in vsnML(sv) : L-BFGS-B needs finite values of 'fn'
justvsn
vsn
Normalization
vsn2
Proteomics
15 months ago
Arend
▴ 10
3
votes
3
replies
1.3k
views
Limma repeated-measures model: Partial NA coefficients
Proteomics
limma
repeated-measures
updated 15 months ago by
Gordon Smyth
50k • written 15 months ago by
Luís C.
• 0
0
votes
0
replies
496
views
A question about GWENA R/Bioconductor package
proteomics
GWENA
Proteomics
WGCNA
17 months ago
Abdullah
• 0
0
votes
0
replies
694
views
Job:
PhD Positions in Computational Research, Data Science and Artificial Intelligence at the German Cancer Research Center (DKFZ)
cancer
bioinformatics
proteomics
genomics
phd
17 months ago
DKFZ International PhD Program
▴ 10
1
vote
3
replies
897
views
Proteomics-time series with repeated measures
Proteomics
limma
repeatedmeasures
TimeSeriesExperiment
18 months ago • updated 17 months ago
proteome_AO
• 0
0
votes
5
replies
981
views
Inquiry about suitable package for proteomics study design
Proteomics
design
updated 18 months ago by
evocanres
• 0 • written 18 months ago by
proteome_AO
• 0
0
votes
0
replies
554
views
Outliers
Proteomics
Proteome
updated 19 months ago by
ATpoint
★ 4.0k • written 19 months ago by
bansalheena10
• 0
0
votes
0
replies
475
views
Finding DEGs between two different datasets using limma
Proteomics
limma
proteomi
19 months ago
mfaleevs
• 0
0
votes
3
replies
924
views
Design and contrast matrices for analyzing the effect of two factors of interest on protein expression, controlling for factors and covariates not of…
limma
Proteomics
ProteomicsWorkflow
updated 20 months ago by
Gordon Smyth
50k • written 20 months ago by
samantha.v.goncalves
• 0
1
vote
0
replies
746
views
Job:
Research Fellow in Prostate Cancer Proteomics (Bioinformatics/Stats/Data Analysis) - University of St Andrews
Multiomics
Proteomics
Cancer
Statistics
Bioinformatics
21 months ago
Andy Lynch
▴ 120
0
votes
0
replies
716
views
About normalization of the datasets from Harmonized TCGA data
TCGAbiolinks
Proteomics
GENOMICS
bioinformatics
21 months ago
qiz218591
• 0
2
votes
5
replies
1.7k
views
proteomics analysis
Proteomics
analysis
updated 21 months ago by
jeroen.gilis
▴ 90 • written 21 months ago by
Shakiba
• 0
2
votes
1
reply
984
views
Extremely low P-values when using Limma on high sample size proteomics data
limma
Proteomics
updated 23 months ago by
James W. MacDonald
65k • written 23 months ago by
roger.moreno.justicia
• 0
1
vote
2
replies
920
views
Questions about msqrob2: raw vs LFQ intensities, model design with blocking
msqrob2
ProteomicsWorkflow
proteomics
updated 22 months ago by
Gordon Smyth
50k • written 23 months ago by
Jane
▴ 10
1
vote
0
replies
729
views
Job:
PhD Positions in Computational Research, Data Science and Artificial Intelligence at the German Cancer Research Center (DKFZ)
phd
cancer
genomics
proteomics
bioinformatics
2.0 years ago
DKFZ International PhD Program
▴ 10
0
votes
0
replies
741
views
ProteoMM analysis with two replicates
shotgunproteomics
Proteome
proteomics
Proteomics
ProteoMM
2.1 years ago
ary.lech
▴ 10
0
votes
2
replies
1.7k
views
Limma Differential Analysis on Proteomics data
Proteomics
limma
Limma
DifferentialExpression
updated 2.2 years ago by
Gordon Smyth
50k • written 2.2 years ago by
Mrinal.singh06
• 0
0
votes
0
replies
751
views
Job:
Tenure-track Group Leader Positions in Computational Biology and Biological Chemistry
bioinformatics
genomics
proteomics
biologicalchemistry
sequencing
2.2 years ago
Robert Castelo
★ 3.3k
0
votes
1
reply
1.8k
views
limma/voom for protein intensity data
limma
proteomics
voom
updated 2.6 years ago by
ATpoint
★ 4.0k • written 2.6 years ago by
Endre Sebestyén
▴ 70
0
votes
1
reply
738
views
How to pull-down gene/protein names from the database search, using R ?
proteinProfiles
ProteomicsWorkflow
ProteomicsAnnotationHubData
Proteomics
updated 2.7 years ago by
Gordon Smyth
50k • written 2.7 years ago by
ALOK
• 0
0
votes
5
replies
1.1k
views
In need of linear modeling help for differential expression (proteomics)
Proteomics
limma
vsn
updated 2.7 years ago by
Gordon Smyth
50k • written 2.7 years ago by
Chris
• 0
0
votes
0
replies
893
views
How to handle the imputation and normalisation?
Proteomics
DEP
limma
2.7 years ago
barrypraveen
• 0
0
votes
1
reply
1.1k
views
How to remove batch effect on DEP protemics package?
Proteomics
DEP
MassSpectrometryData
updated 2.8 years ago by
bigomics.team
• 0 • written 2.8 years ago by
barrypraveen
• 0
0
votes
0
replies
1.7k
views
what is the difference between iBAQ or LFQ?
Proteomics
DEP
limma
written 2.8 years ago by
barrypraveen
• 0
0
votes
4
replies
1.2k
views
How to analyse RNA-based protein pulldown mass spectrometry data
Proteomics
limma
MassSpectrometry
updated 12 months ago by
Gordon Smyth
50k • written 2.8 years ago by
barrypraveen
• 0
5
votes
6
replies
3.7k
views
Differential protein/biomarker expression using limma: is that possible?
Proteomics
NPX
limma
updated 3 months ago by
briankleiboeker
• 0 • written 3.1 years ago by
r.i.s.alnuwaysir
▴ 10
0
votes
0
replies
934
views
Limma design multi-level experiment with 3 time points
R
proteomics
limma
3.1 years ago
ellen2270
• 0
6
votes
6
replies
1.6k
views
limma:arrayWeights() and the "prior.n" parameter for biological replicates? (PROTEOMICS)
Proteomics
limma
StatisticalMethod
updated 3.1 years ago by
Gordon Smyth
50k • written 3.1 years ago by
Steve
▴ 10
0
votes
4
replies
1.1k
views
DEP - Run filter_missval() with a threshold ranging from 0 to 3
proteomics
DEP
3.1 years ago
rina
▴ 30
0
votes
0
replies
947
views
Job:
Tenure-track Group Leader Position in Computational Biology
bioinformatics
sequencing
barcelona
proteomics
3.2 years ago
Robert Castelo
★ 3.3k
2
votes
1
reply
3.1k
views
Convert UniProt Entry Names into Gene Symbols
Proteomics
ProteomicsWorkflow
UniProt.ws
updated 3.2 years ago by
James W. MacDonald
65k • written 3.2 years ago by
Dario Strbenac
★ 1.5k
0
votes
0
replies
1.1k
views
Job:
Proteomics Bioinformatician
JobPosting
Proteomics
Statistics
Job
3.3 years ago
Laura
• 0
1
vote
2
replies
1.1k
views
calculate theoretical isotope distribution give the AA sequence
Metabolomics
proteomics
MassSpectrometry
3.3 years ago
Oliver
• 0
0
votes
3
replies
1.1k
views
Why I can not install rTANDEM?
MassSpectrometry
Proteomics
mzR
3.4 years ago
Gilad
• 0
1
vote
2
replies
1.1k
views
error in installation of 'org.Hs.eg.db'
proteomics
GenomicSequence
updated 3.4 years ago by
tcalvo
▴ 90 • written 3.4 years ago by
Eliza
• 0
1
vote
0
replies
1.5k
views
News:
Online training - Proteomics in R and Bioconductor
ProteomicsWorkflow
proteomics
Proteome
3.4 years ago
info
▴ 10
5
votes
6
replies
1.4k
views
possible package naming conflict
proteomics
3.4 years ago
Tobias
▴ 40
50 results • Page
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Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs
by
Guangchuang Yu
★ 1.2k
an example is also presented in <https://pubmed.ncbi.nlm.nih.gov/34557778/>.
Comment: Trying to use enrichGO
by
Guido Hooiveld
★ 3.9k
Nothing would prevent you from using the `enrichGO` function (or any other function for over-representation analysis [ORA]) with only 14 ge…
Comment: Different Shrunk Log2FC according with reference
by
andrebolerbarros
▴ 20
Thanks @atpoint for your answer! The issue with that is then it severely hinders the possiblity of using `apeglm` shrinking approach, sinc…
Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge
by
ATpoint
★ 4.0k
The error that is relevant is `Aborted (core dumped)`. This line 2890 refers to the C source code that throws the error, it is not relevant…
Answer: Different Shrunk Log2FC according with reference
by
ATpoint
★ 4.0k
Please see: https://support.bioconductor.org/p/p134551/ I asked basically the same before. In short, reference level might have an influ…
Votes
C: SGSeq: moving toward diffex from SGSeq analysis
DEXSeq-Error in FUN(X[[i]], ...) : subscript out of bounds
Subset DEXSeqDataSet In DEXSeq
How to get all possible comparisons in DiffBind
Comment: get BM error
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