Bioconductor Proteomics

Showing : Proteomics • reset

votes

replies

194

views

Proteomics JobPosting SingleCell Spatial SpatialExperiment

7 weeks ago Peter Hickey ▴ 740

votes

189

views

Proteomics ProteoMM ProteomicsWorkflow Proteome

written 4 months ago by ary.lech ▴ 10

votes

replies

227

views

Bioconductor Proteomics

5 months ago Joshua • 0

vote

replies

711

views

Proteomics proDA MultipleComparison

7 months ago t.b.n.nguyen-9 • 0

vote

replies

441

views

Proteomics DifferentialRegulation limma

8 months ago svlachavas ▴ 830

votes

replies

718

views

RforProteomics Proteomics ProteomicsWorkflow

updated 8 months ago by Laurent Gatto 1.6k • written 9 months ago by mmvar • 0

votes

591

views

Proteomics RforProteomics ProteomicsWorkflow Spectra MassSpectrometryData

updated 9 months ago by Laurent Gatto 1.6k • written 9 months ago by mmvar • 0

votes

replies

763

views

Proteomics ProteoMM ProteomicsWorkflow

updated 9 months ago by mmvar • 0 • written 11 months ago by nkvnambiar • 0

votes

replies

1.7k

views

Proteomics DEP limma

written 2.8 years ago by barrypraveen • 0

votes

replies

3.7k

views

Proteomics NPX limma

updated 3 months ago by briankleiboeker • 0 • written 3.1 years ago by r.i.s.alnuwaysir ▴ 10

votes

2.2k

views

mass spectrometry proteomics metabolomics Tutorial

written 3.5 years ago by Johannes Rainer ★ 2.0k

vote

1.4k

views

RNAseq deseq2 proteomics transcriptomics workshop News

written 5.2 years ago by Laurent Gatto 1.6k

votes

replies

2.9k

views

differential expression proteomics

updated 8 months ago by ATpoint ★ 4.0k • written 6.3 years ago by cardin.julie • 0

13 results • Page 1 of 1

Recent ...

Replies

Comment: Reproducibility issue with scran together with lapply and BiocParallel by ATpoint ★ 4.0k

Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…

Answer: Reproducibility issue with scran together with lapply and BiocParallel by Aaron Lun ★ 28k

IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…

Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0

I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…

Votes

C: null model and DEXSeqDataSet object in DEXSEQ

A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?

A: How to explain how DESeq2 works to someone with zero bioinformatics background?

Answer: Interpret plot from DiffBind

Answer: How to retrieve gene ontology GO class from gene list?

Awards • All

Supporter to JKim • 0