Showing : Proteomics • reset
1
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Questions about msqrob2: raw vs LFQ intensities, model design with blocking
msqrob2 ProteomicsWorkflow proteomics
updated 26 days ago by 45k • written 8 weeks ago by • 0
2
votes
1
reply
153
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Extremely low P-values when using Limma on high sample size proteomics data
limma Proteomics
updated 7 weeks ago by 60k • written 7 weeks ago by • 0
1
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0
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113
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Job: PhD Positions in Computational Research, Data Science and Artificial Intelligence at the German Cancer Research Center (DKFZ)
phd cancer genomics proteomics bioinformatics
10 weeks ago DKFZ International PhD Program ▴ 10
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0
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104
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ProteoMM analysis with two replicates
shotgunproteomics Proteome proteomics Proteomics ProteoMM
3 months ago ary.lech ▴ 10
0
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2
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327
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Limma Differential Analysis on Proteomics data
Proteomics limma Limma DifferentialExpression
updated 4 months ago by 45k • written 4 months ago by • 0
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0
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181
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Job: Tenure-track Group Leader Positions in Computational Biology and Biological Chemistry
bioinformatics genomics proteomics biologicalchemistry sequencing
5 months ago Robert Castelo ★ 2.9k
0
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1
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397
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limma/voom for protein intensity data
limma proteomics voom
updated 9 months ago by ★ 1.3k • written 9 months ago by ▴ 60
0
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1
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227
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How to pull-down gene/protein names from the database search, using R ?
proteinProfiles ProteomicsWorkflow ProteomicsAnnotationHubData Proteomics
updated 10 months ago by 45k • written 10 months ago by • 0
0
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5
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357
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In need of linear modeling help for differential expression (proteomics)
Proteomics limma vsn
updated 10 months ago by 45k • written 10 months ago by • 0
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0
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203
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How to handle the imputation and normalisation?
Proteomics DEP limma
10 months ago barrypraveen • 0
0
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1
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299
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How to remove batch effect on DEP protemics package?
Proteomics DEP MassSpectrometryData
updated 11 months ago by • 0 • written 11 months ago by • 0
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0
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483
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what is the difference between iBAQ or LFQ?
Proteomics DEP limma
11 months ago barrypraveen • 0
12 results • Page 1 of 1
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Answer: Can't Install ensembldb and EnsDb.Hsapiens.v86 by mbk0asis • 0
Error: package or namespace load failed for ‘AnnotationDbi’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[…
Comment: How to get DESeq2 results for a list of genes by ATpoint ★ 1.3k
Wow, I give you a full solution **including** explanation of basics and why the error you see even come up, and you still complain. Are the…
Comment: Error while running DESeq2 by ATpoint ★ 1.3k
You don't need stringtie unless you want to assemble a transcriptome. Just use featureCounts to make your count matrix. It will do fine, an…
Comment: Error while running DESeq2 by srikar • 0
Thank you . I will look into it, and upon running sum(countData<0), out of 231780 elements, 231642 of those are below 0. I think it may be …
Comment: rename phenotypic variables in pData (microarray) or colData (RNA-Seq) by Basti ▴ 330
`names(pData(microarray))[1]<- "NEW_VAR"` works, what is the error you have ?
Votes
Comment: Error while running DESeq2
A: How to handle the change in resultsNames() for DESeq2 ?
A: How to handle the change in resultsNames() for DESeq2 ?
C: How to handle the change in resultsNames() for DESeq2 ?
Comment: Although I successfully installed the package "simpleaffy'' , I cannot library i
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