Bioconductor ProteomicsWorkflow

Showing : ProteomicsWorkflow • reset

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186

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Proteomics ProteoMM ProteomicsWorkflow Proteome

written 4 months ago by ary.lech ▴ 10

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6.0k

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limma ProteomicsWorkflow

updated 7 months ago by Gordon Smyth 50k • written 2.5 years ago by David Lyon ▴ 340

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580

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Proteomics RforProteomics ProteomicsWorkflow Spectra MassSpectrometryData

updated 8 months ago by Laurent Gatto 1.6k • written 8 months ago by mmvar • 0

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707

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RforProteomics Proteomics ProteomicsWorkflow

updated 8 months ago by Laurent Gatto 1.6k • written 8 months ago by mmvar • 0

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747

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Proteomics ProteoMM ProteomicsWorkflow

updated 8 months ago by mmvar • 0 • written 10 months ago by nkvnambiar • 0

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816

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ProteomicsWorkflow proteomics proteinProfiles

updated 13 months ago by Laurent Gatto 1.6k • written 3.4 years ago by yueli7 ▴ 20

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917

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limma Proteomics ProteomicsWorkflow

updated 20 months ago by Gordon Smyth 50k • written 20 months ago by samantha.v.goncalves • 0

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918

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msqrob2 ProteomicsWorkflow proteomics

updated 22 months ago by Gordon Smyth 50k • written 23 months ago by Jane ▴ 10

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731

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proteinProfiles ProteomicsWorkflow ProteomicsAnnotationHubData Proteomics

updated 2.6 years ago by Gordon Smyth 50k • written 2.6 years ago by ALOK • 0

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3.1k

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Proteomics ProteomicsWorkflow UniProt.ws

updated 3.2 years ago by James W. MacDonald 65k • written 3.2 years ago by Dario Strbenac ★ 1.5k

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1.5k

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ProteomicsWorkflow proteomics Proteome

3.4 years ago info ▴ 10

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1.0k

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Proteome ProteomicsWorkflow proteomics

updated 3.4 years ago by swbarnes2 ★ 1.3k • written 3.4 years ago by yueli7 ▴ 20

12 results • Page 1 of 1

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Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Robert Castelo ★ 3.2k

Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…

Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0

I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…

Answer: Cannabis and KEGGgraph by deeenes ▴ 30

Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…

Answer: RNAseq:Technical replicates from different batches by Gordon Smyth 50k

I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…

Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param by russ.bainer ▴ 10

Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…

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Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

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Scholar to Robert Castelo ★ 3.2k

Popular Question to James W. MacDonald 65k