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ProteomicsWorkflow
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167
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analysis of overexpressed proteins in metaproteomes
Proteomics
ProteoMM
ProteomicsWorkflow
Proteome
written 4 months ago by
ary.lech
▴ 10
6
votes
5
replies
5.8k
views
Using Limma R package For Proteomics differential expression
limma
ProteomicsWorkflow
updated 6 months ago by
Gordon Smyth
50k • written 2.4 years ago by
David Lyon
▴ 340
0
votes
1
reply
526
views
R for Mass Spectrometry: Precursor Scan Number lost when converting .wiff to .mzML?
Proteomics
RforProteomics
ProteomicsWorkflow
Spectra
MassSpectrometryData
updated 8 months ago by
Laurent Gatto
1.6k • written 8 months ago by
mmvar
• 0
0
votes
5
replies
674
views
R for Mass Spectrometry: PSMatch package won't read .mzid file exported from ProteinPilot?
RforProteomics
Proteomics
ProteomicsWorkflow
updated 8 months ago by
Laurent Gatto
1.6k • written 8 months ago by
mmvar
• 0
0
votes
2
replies
696
views
Proteomics data with NA values
Proteomics
ProteoMM
ProteomicsWorkflow
updated 8 months ago by
mmvar
• 0 • written 10 months ago by
nkvnambiar
• 0
0
votes
1
reply
788
views
Which software can work withThermo ProteomeDiscover software output?
ProteomicsWorkflow
proteomics
proteinProfiles
updated 13 months ago by
Laurent Gatto
1.6k • written 3.3 years ago by
yueli7
▴ 20
0
votes
3
replies
889
views
Design and contrast matrices for analyzing the effect of two factors of interest on protein expression, controlling for factors and covariates not of…
limma
Proteomics
ProteomicsWorkflow
updated 19 months ago by
Gordon Smyth
50k • written 19 months ago by
samantha.v.goncalves
• 0
1
vote
2
replies
886
views
Questions about msqrob2: raw vs LFQ intensities, model design with blocking
msqrob2
ProteomicsWorkflow
proteomics
updated 22 months ago by
Gordon Smyth
50k • written 23 months ago by
Jane
• 0
0
votes
1
reply
709
views
How to pull-down gene/protein names from the database search, using R ?
proteinProfiles
ProteomicsWorkflow
ProteomicsAnnotationHubData
Proteomics
updated 2.6 years ago by
Gordon Smyth
50k • written 2.6 years ago by
ALOK
• 0
2
votes
1
reply
3.0k
views
Convert UniProt Entry Names into Gene Symbols
Proteomics
ProteomicsWorkflow
UniProt.ws
updated 3.2 years ago by
James W. MacDonald
65k • written 3.2 years ago by
Dario Strbenac
★ 1.5k
1
vote
0
replies
1.4k
views
News:
Online training - Proteomics in R and Bioconductor
ProteomicsWorkflow
proteomics
Proteome
3.3 years ago
info
▴ 10
0
votes
1
reply
1.0k
views
R package to change protein *.msf file to any readable file
Proteome
ProteomicsWorkflow
proteomics
updated 3.3 years ago by
swbarnes2
★ 1.3k • written 3.3 years ago by
yueli7
▴ 20
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May be documented by the software you are using? https://github.com/lpantano/DEGreport
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Yes that is correct
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It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
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Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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