Bioconductor ProteomicsWorkflow

Showing : ProteomicsWorkflow • reset

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11k

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limma ProteomicsWorkflow

updated 18 months ago by Gordon Smyth 52k • written 3.4 years ago by David Lyon ▴ 340

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1.2k

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RforProteomics Proteomics ProteomicsWorkflow

updated 19 months ago by Laurent Gatto 1.6k • written 20 months ago by mmvar • 0

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675

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ProteomicsWorkflow PSMatch Spectra RforProteomics

updated 5 months ago by Laurent Gatto 1.6k • written 5 months ago by Jane_Huang • 0

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1.3k

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limma Proteomics ProteomicsWorkflow

updated 2.6 years ago by Gordon Smyth 52k • written 2.6 years ago by samantha.v.goncalves • 0

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1.3k

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Proteomics ProteoMM ProteomicsWorkflow

updated 20 months ago by mmvar • 0 • written 21 months ago by nkvnambiar • 0

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1.3k

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msqrob2 ProteomicsWorkflow proteomics

updated 2.8 years ago by Gordon Smyth 52k • written 2.9 years ago by Jane ▴ 10

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Proteomics RforProteomics ProteomicsWorkflow Spectra MassSpectrometryData

updated 20 months ago by Laurent Gatto 1.6k • written 20 months ago by mmvar • 0

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ProteomicsWorkflow proteomics proteinProfiles

updated 2.1 years ago by Laurent Gatto 1.6k • written 4.3 years ago by yueli7 ▴ 20

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Proteome ProteomicsWorkflow proteomics

updated 4.3 years ago by swbarnes2 ★ 1.4k • written 4.3 years ago by yueli7 ▴ 20

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963

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proteinProfiles ProteomicsWorkflow ProteomicsAnnotationHubData Proteomics

updated 3.6 years ago by Gordon Smyth 52k • written 3.6 years ago by ALOK • 0

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466

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Proteomics ProteoMM ProteomicsWorkflow Proteome

written 15 months ago by ary.lech ▴ 10

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Proteomics ProteomicsWorkflow UniProt.ws

updated 4.1 years ago by James W. MacDonald 68k • written 4.1 years ago by Dario Strbenac ★ 1.6k

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1.8k

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ProteomicsWorkflow proteomics Proteome

4.3 years ago info ▴ 10

13 results • Page 1 of 1

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Comment: DESEQ2 looking at main effects while controlling for a continuous variable by Lennie • 0

Thank you so much for taking the time and for the detailed explanation! I was wondering, in your numeric contrast of c(1, -1, 0,0,0), doe…

Answer: DESEQ2 looking at main effects while controlling for a continuous variable by James W. MacDonald 68k

If you use a factor effects model (with an intercept), then you will have a baseline group (the intercept), and all other coefficients exce…

Comment: Issue with DECIPHER::IdTaxa by Daniel • 0

The issue is still there and it is a real pain. ape and ade4 are used by packages like Phyloseq. There should be a way to avoid these inc…

Comment: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with by Gordon Smyth 52k

I generally recommend `block=individual` for unbalanced designs, to recover information from incomplete blocks. I would only be disuaded fr…

Comment: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with by Devin ▴ 10

Thank you, Gordon, for your responses to all of my questions. For analysis A), in the case when a patient has either a missing timepoint or…

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Answer: DESEQ2 looking at main effects while controlling for a continuous variable

Use of clusterProfiler : Error in testForValidKeytype(x, keytype)

Comment: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with

Answer: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with

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