Bioconductor ProteomicsWorkflow

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Proteomics ProteoMM ProteomicsWorkflow Proteome

written 4 months ago by ary.lech ▴ 10

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6.0k

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limma ProteomicsWorkflow

updated 7 months ago by Gordon Smyth 50k • written 2.5 years ago by David Lyon ▴ 340

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574

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Proteomics RforProteomics ProteomicsWorkflow Spectra MassSpectrometryData

updated 8 months ago by Laurent Gatto 1.6k • written 8 months ago by mmvar • 0

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704

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RforProteomics Proteomics ProteomicsWorkflow

updated 8 months ago by Laurent Gatto 1.6k • written 8 months ago by mmvar • 0

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740

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Proteomics ProteoMM ProteomicsWorkflow

updated 8 months ago by mmvar • 0 • written 10 months ago by nkvnambiar • 0

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814

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ProteomicsWorkflow proteomics proteinProfiles

updated 13 months ago by Laurent Gatto 1.6k • written 3.4 years ago by yueli7 ▴ 20

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913

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limma Proteomics ProteomicsWorkflow

updated 20 months ago by Gordon Smyth 50k • written 20 months ago by samantha.v.goncalves • 0

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915

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msqrob2 ProteomicsWorkflow proteomics

updated 22 months ago by Gordon Smyth 50k • written 23 months ago by Jane ▴ 10

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730

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proteinProfiles ProteomicsWorkflow ProteomicsAnnotationHubData Proteomics

updated 2.6 years ago by Gordon Smyth 50k • written 2.6 years ago by ALOK • 0

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3.1k

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Proteomics ProteomicsWorkflow UniProt.ws

updated 3.2 years ago by James W. MacDonald 65k • written 3.2 years ago by Dario Strbenac ★ 1.5k

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1.5k

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ProteomicsWorkflow proteomics Proteome

3.4 years ago info ▴ 10

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1.0k

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Proteome ProteomicsWorkflow proteomics

updated 3.4 years ago by swbarnes2 ★ 1.3k • written 3.4 years ago by yueli7 ▴ 20

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Comment: Input Question for deseq.r by ATpoint ★ 4.0k

It is unclear what "deseq.r" is. It is not part of DESeq2, and almost certainly no part of RSeqAn. Please add details, and keep in mind tha…

Answer: DESEQ2 output gives multiple groups when only 2 groups are present by ATpoint ★ 4.0k

In the first PCA plot there is almost certainly some hidden character like whitespaces in the column from colData that encodes this group. …

Answer: A ComBat-seq issue: the covariates are confounded by ATpoint ★ 4.0k

```r > table(batch, group) group batch egfr gfp her2 1 0 12 5 2 6 6 0 ``` All of her2 is batch2, all of egfr i…

Comment: DESeq2 setting significant p-value by Dev • 0

after running DESeq2 does it sort the value on the basis of pvalue, or anything, or does it give the data back in the input format I have …

Comment: DESeq filtering specific to contrasts by Carlin95 • 0

But wouldn't this result in a different gene set for each analysis stratification? How can you then compare if maybe gene x comes up in Tim…

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Comment: Reading huge bismark coverage files using bbseq::read.bismark

Answer: Reading huge bismark coverage files using bbseq::read.bismark

Answer: How many of my genes from my gene list are in each KEGG pathway?

Comment: Light difference when using coef vs omit a group when compare 3 groups.

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