Bioconductor ProteomicsWorkflow

Showing : ProteomicsWorkflow • reset

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189

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Proteomics ProteoMM ProteomicsWorkflow Proteome

written 4 months ago by ary.lech ▴ 10

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6.1k

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limma ProteomicsWorkflow

updated 7 months ago by Gordon Smyth 50k • written 2.5 years ago by David Lyon ▴ 340

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716

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RforProteomics Proteomics ProteomicsWorkflow

updated 8 months ago by Laurent Gatto 1.6k • written 9 months ago by mmvar • 0

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588

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Proteomics RforProteomics ProteomicsWorkflow Spectra MassSpectrometryData

updated 9 months ago by Laurent Gatto 1.6k • written 9 months ago by mmvar • 0

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762

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Proteomics ProteoMM ProteomicsWorkflow

updated 9 months ago by mmvar • 0 • written 10 months ago by nkvnambiar • 0

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824

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ProteomicsWorkflow proteomics proteinProfiles

updated 14 months ago by Laurent Gatto 1.6k • written 3.4 years ago by yueli7 ▴ 20

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924

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limma Proteomics ProteomicsWorkflow

updated 20 months ago by Gordon Smyth 50k • written 20 months ago by samantha.v.goncalves • 0

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920

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msqrob2 ProteomicsWorkflow proteomics

updated 22 months ago by Gordon Smyth 50k • written 23 months ago by Jane ▴ 10

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738

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proteinProfiles ProteomicsWorkflow ProteomicsAnnotationHubData Proteomics

updated 2.7 years ago by Gordon Smyth 50k • written 2.7 years ago by ALOK • 0

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3.1k

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Proteomics ProteomicsWorkflow UniProt.ws

updated 3.2 years ago by James W. MacDonald 65k • written 3.2 years ago by Dario Strbenac ★ 1.5k

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1.5k

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ProteomicsWorkflow proteomics Proteome

3.4 years ago info ▴ 10

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1.0k

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Proteome ProteomicsWorkflow proteomics

updated 3.4 years ago by swbarnes2 ★ 1.3k • written 3.4 years ago by yueli7 ▴ 20

12 results • Page 1 of 1

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Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by swbarnes2 ★ 1.3k

Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…

Comment: get BM error by James W. MacDonald 65k

I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…

Comment: get BM error by Fara • 0

Thank you for your response. The primary reason for translating Ensembl IDs into Entrez Gene IDs is to perform KEGG (Kyoto Encyclopedia of…

Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by James W. MacDonald 65k

That's weird. I don't have any problem at all generating the `OrgDb` on my box. How big is the gene2pubmed.gz file? I get this: ``` gzip -…

Votes

Answer: get BM error

Answer: Use of negative binomial model for exponential decay rate estimation using DESeq

Comment: Different Shrunk Log2FC according with reference

Reproducibility issue with scran together with lapply and BiocParallel

C: SGSeq: moving toward diffex from SGSeq analysis

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