Biostar Pseudotime

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tradeSeq pseudotime

updated 2 days ago by Koen Van den Berge ▴ 180 • written 3 months ago by fluentin44 • 0

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Answer: Help with Error in DiffBind by Rory Stark ★ 4.7k

In your case, with only two replicates in each sample group, you can not perform a default analysis using only `dba.analyze()`. I suggest t…

Comment: Help with Error in DiffBind by Rory Stark ★ 4.7k

Looks like you should either delete the file > /labs/PI/atacseq_output_03172023/bwa/merged_library/DISEASED_REP2.mLb.clN.sorted.bam.bai …

Comment: How to getting synonymous SNPs from BiomaRt before timing out? by James W. MacDonald 62k

``` > options(timeout = 1e6) > z <- getBM(snp_attributes, c("ensembl_gene","so_mini_parent_name"), list("ENSG00000138376", "synonymous_vari…

Comment: can negative value microarray matrix data analysed by limma directly by linouhao ▴ 20

Your help has really solved my huge confusion. You can help me look at a specific data set. I find the ***result is very strange. The ad…

Comment: How to getting synonymous SNPs from BiomaRt before timing out? by Damien • 0

Thank you for your response. How can I request for biomaRt to retrieve only synonymous variants? It does not appear to be an option for fi…

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Answer: Help with Error in DiffBind

Comment: Help with Error in DiffBind

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