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5
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Job: Summer Studentships in Data Science (Computational Cancer Biology) at the University of Cambridge
R python deep learning machine learning cancer genomics Job
7.1 years ago Shamith.Samarajiwa ▴ 180
5
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23
replies
6.2k
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Convertion of indexed bam file to tsv file format
python samtools
updated 8.5 years ago by 16k • written 8.5 years ago by • 0
3
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4
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1.6k
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seq2pathway error on Mac OS X
seq2pathway error python mac os x
8.6 years ago termanini ▴ 10
2
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0
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1.2k
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Job: Full-time bioinformatics instructor position at Fred Hutch
R shell Python SQL Job
6.2 years ago ematsen ▴ 20
2
votes
4
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1.1k
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Are there any functions to subtract all features(rows) to a particular value(row) in the same data file?
R python normalization matrix
updated 4.7 years ago by ▴ 30 • written 4.7 years ago by ▴ 10
1
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0
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789
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Job: Bioconductor Core developers group opening
R cloud github python git
20 months ago Vincent J. Carey, Jr. 6.7k
1
vote
1
reply
776
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Python functionality feature request
python bioconductor
updated 5.7 years ago by 25k • written 5.7 years ago by • 0
1
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2
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1.3k
views
Load data with rhdf5
rhdf5 python
updated 14 months ago by • 0 • written 4.0 years ago by • 0
1
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2
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1.5k
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DEXSeq Python script dexseq_prepare_annotation.py unable to process my .gtf file
dexseq python gtf gff3 annotation
4.0 years ago Raito92 ▴ 60
0
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0
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938
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Job: Bioinformatics Analyst II, Genomics Shared Resource (Seattle, WA)
GENOMICS BIOINFORMATICS SEATTLE R PYTHON Job
4.7 years ago Fred Hutch (Recruiting) ▴ 40
0
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0
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827
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Job: Senior Data Engineer | Poland | remote
AWS BigData Engineer python
3.0 years ago Ewa • 0
0
votes
1
reply
889
views
Change the interval of bed file
mappability bed python
updated 2.3 years ago by 65k • written 2.3 years ago by • 0
0
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1
reply
804
views
python and R
snpeff python tophat r RNAseq123
updated 2.7 years ago by ★ 3.9k • written 2.7 years ago by • 0
0
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0
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1.6k
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Job: Calling all Clinical Genomic Scientist
computational biology genomics genetics Python java Job
8.8 years ago careers • 0
0
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2
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707
views
TnSeq as ZINB? Alternatives in R?
DESeq2 R edgeR Python TnSeq
updated 16 months ago by • 0 • written 17 months ago by ▴ 90
0
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0
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1.5k
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DEXSeq analysis of alternative splicing: error 'SAM optional field tag NH not found'
DEXSeq splicing python SAM
8.5 years ago Fiona ▴ 70
0
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0
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1.9k
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Job: Harvard Medical School: Biomedical Data Scientist Postdoctoral Associate
biomedical informatics data science python SQL Job
8.2 years ago Doe, Aimee ▴ 40
0
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0
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1.8k
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Job: Bioinformatics Programmer (Statistician) at University of California at San Francisco
R bioinformatician job Perl Python statistics Job
8.0 years ago • updated 7.7 years ago clif.duhn • 0
0
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0
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1.4k
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Job: Data Scientist / Bioinformatician / Statistician at University of California
R python stats bioinformatics perl Job
7.7 years ago clif.duhn • 0
0
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0
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1.2k
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Job: Bioinformatics Engineer / Data Analyst
python bio ngs linux Job
6.1 years ago EMBL Recruitment • 0
0
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0
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1.0k
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Job: 2 Postdoc Positions in computational epigenetics and non-coding RNA analysis (#CNPD08)
bioinformatician job rna-seq chipseq gsea python Job
5.7 years ago l.brown ▴ 10
0
votes
0
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1.0k
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Job: Bioinformatics Scientist II
bioinformatics scientist python computational Job
5.2 years ago careers • 0
0
votes
0
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842
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Job: Summer Studentships in Data Science & Computational Biology (2019) at the University of Cambridge
R Python Computational-Biology Cancer Job
5.1 years ago Shamith.Samarajiwa ▴ 180
23 results • Page 1 of 1
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Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0
How am i making the data? I am using the DESeq2 output data which I had generated
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq by Michael Love 41k
Sounds reasonable. For ranking genes, you could choose those with low decay rate but removing thoses where it is indistinguishable from …
Answer: Citation for edgeR user guide by Gordon Smyth 50k
Thanks for thinking about how to cite edgeR. Citations are indeed the main way by which the edgeR authors get credit for their work. The Us…
Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k
You are just making up data? What is the point of this exercise?
Comment: How to retrieve gene ontology GO class? by James W. MacDonald 65k
What do you mean by 'the information'? Do you have things in particular that you want?
Votes
Answer: Citation for edgeR user guide
Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
Answer: minfi::read.metharray.exp
Comment: Trying to use enrichGO
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