Bioconductor QC

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3.4k

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exactSNP qc variantannotation

updated 9.1 years ago by Wei Shi ★ 3.5k • written 9.1 years ago by daniel.silvestre ▴ 100

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3.2k

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scater scran singlecellexperiment normalize qc

updated 20 months ago by Dayme • 0 • written 4.7 years ago by kushshah ▴ 10

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1.6k

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flowAI flow_auto_qc QC flow cytometry

updated 4.1 years ago by gianni • 0 • written 4.1 years ago by vinko.tosevski • 0

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1.9k

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affy qc simpleaffy HTA

updated 8.7 years ago by James W. MacDonald 64k • written 8.7 years ago by Guilherme Rocha ▴ 40

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2.9k

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ChIPSeq QC ChIPQC

updated 8.3 years ago by Thomas Carroll ▴ 420 • written 8.3 years ago by Philip Lijnzaad ▴ 160

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1.4k

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updated 8.1 years ago by James W. MacDonald 64k • written 8.1 years ago by libya.tahani • 0

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1.3k

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qc qualitycontrol arrayqualitymetrics mouse gene st 2.0 affymetrix

updated 6.3 years ago by James W. MacDonald 64k • written 6.3 years ago by n.lu • 0

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1.2k

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ChIP-seq ChIPQC QC

updated 4.3 years ago by zhenfeng.liu1 ▴ 20 • written 4.8 years ago by star ▴ 10

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1.1k

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singlecellexperiment rpkm normalization qc

updated 4.7 years ago by Aaron Lun ★ 28k • written 4.7 years ago by kushshah ▴ 10

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1.2k

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beadarray qc

8.8 years ago meeta.mistry ▴ 30

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388

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HTS QC

updated 3.8 years ago by shepherl 3.6k • written 3.8 years ago by Happyflower • 0

11 results • Page 1 of 1

Recent ...

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Answer: biomaRt_getBM_Failed to collect lazy table by James W. MacDonald 64k

That's an old bug that you should be able to fix by updating. I can't remember what package, although `db_collect` comes from `dbplyr` (and…

Comment: rDGIdb package inconsistency with web interface by christopherjamessteel1990 • 0

I went on https://www.dgidb.org/api and searched "RPS3A" and got the below result. Not sure how you got something different. There is certa…

Comment: ScRNAseq analysis scran :: quickcluster Error by ruba-mahmoud • 0

I googled the error but didn't counter this one! it worked perfectly thank you for your help!

Answer: ScRNAseq analysis scran :: quickcluster Error by ATpoint ★ 3.6k

Please google errors, this has been asked recently. Same error, different Bioc package, same root cause: https://support.bioconductor.org/p…

Comment: DiffBind getting Fold values of near 0 by ATpoint ★ 3.6k

Almost certainly data are noisy and DESeq2 (which is used internally) shrinks the fold changes towards zero, because the naive fold changes…

Votes

Answer: ScRNAseq analysis scran :: quickcluster Error

Comment: Ensembl down???

Comment: Problem making orgdb package for bacteria (Pseudomonas) using annotation hub and

Comment: Ensembl down???

Answer: SingleR annotation of several slots/patients

Awards • All

Popular Question to Henrik Bengtsson ★ 2.4k

Popular Question to paul.johnston ▴ 10

Teacher to Mike Smith ★ 6.2k