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QDNAseq
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QDNAseq Error calculateBlacklist
QDNAseq
blacklist
CopyNumberVariation
blocklist
5 months ago
briverog
• 0
1
vote
1
reply
551
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QDNAseq - GetBinAnnotations - species/builds available
qdnaseq
getbinannotations
6.7 years ago
matthias.desmet
• 0
5
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15
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2.0k
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problem with QDNAseq's createBins for new BSgenome package
bsgenome
biostrings
qdnaseq
pfalciparum
updated 6.8 years ago by
ilari.scheinin
▴ 50 • written 6.8 years ago by
penington.j
• 0
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Comment: broken chain import in liftOver
by
Marcel Ramos
570
You could also try using one of the chain files in `AnnotationHub`, which gets auto-cached: ```r library(AnnotationHub) query(ah <- Annot…
Answer: paired analysis : return data matrix with indvidual/subject effects eliminated.
by
James W. MacDonald
59k
See `removeBatchEffect` in the `limma` package.
Comment: GDCdownload Directory Problem :(
by
Marcel Ramos
570
FWIW, `TCGAutils` is not a related package.
Comment: help please!
by
1051444231
• 0
I have updated Rtools
Comment: help please!
by
1051444231
• 0
> BiocManager::install("AnnotationDbi",force = TRUE) 'getOption("repos")' replaces Bioconductor standard repositories, see '?repositories' …
Votes
Answer: broken chain import in liftOver
Answer: toGRanges help!
Answer: toGRanges help!
Comment: CPM after RUVseq
A: Using the plotting functions of clusterProfiler / enrichplot with enrichment res
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