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QualityControl
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0
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895
views
getsex function error.
QualityControl
methylationArrayAnalysis
2.2 years ago
zusman
• 0
0
votes
1
reply
1.0k
views
Error when running qAlign from QuasR package for sequence alignment & QC.
QualityControl
Alignment
QuasR
updated 3.2 years ago by
Michael Stadler
▴ 350 • written 3.2 years ago by
h.kozlowski
• 0
0
votes
0
replies
603
views
AffyExpress choose relative path folder
folder
quality
QualityControl
AffyExpress
3.3 years ago
bastien_chassagnol
• 0
0
votes
2
replies
1.4k
views
Quality control for Affymetrix GeneChip Mouse Gene 2.0 ST Array
qc
qualitycontrol
arrayqualitymetrics
mouse gene st 2.0
affymetrix
updated 6.7 years ago by
James W. MacDonald
65k • written 6.7 years ago by
n.lu
• 0
3
votes
2
replies
901
views
Q score filter to each base in QualityScaledDNAStringSet
qualitycontrol
updated 7.1 years ago by
Mike Smith
★ 6.5k • written 7.1 years ago by
XIA.PAN
▴ 20
0
votes
0
replies
992
views
Shinymethyl 850K Array quality control signal cutoffs
shinymethyl
minfi
epic microarray
methylationepic
qualitycontrol
7.2 years ago
chelsey.ju
• 0
2
votes
0
replies
1.1k
views
Quality Assessment of one color Agilent arrays?
limma
one colour
agilent microarrays
qualitycontrol
arrayqualitymetrics
7.5 years ago
Bouzid.a
▴ 20
1
vote
14
replies
3.7k
views
GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and workflow
GWASTools
qualitycontrol
HumanOmni5-4BeadChip
GenomeStudio
illumina
updated 7.9 years ago by
Stephanie M. Gogarten
▴ 870 • written 8.0 years ago by
Lna
• 0
2
votes
2
replies
1.5k
views
Manually compute NUSE score
NUSE
qualitycontrol
microarray
updated 8.3 years ago by
Diego Diez
▴ 760 • written 8.3 years ago by
jacorvar
▴ 40
4
votes
2
replies
2.4k
views
Quality control on RNA-Seq (level 3) data from TCGA
rna-seq
GC-Content
qualitycontrol
updated 8.4 years ago by
Matthew McCormack
▴ 180 • written 8.5 years ago by
NS
▴ 60
1
vote
2
replies
1.7k
views
array quality control, affy probes, contracts setting in limma, result interpretation and weights
limma
affy
probe
qualitycontrol
design and contrast matrix
updated 9.3 years ago by
Gordon Smyth
50k • written 9.3 years ago by
alakatos
▴ 130
0
votes
1
reply
1.2k
views
read.maimages problem under sun ?
Microarray
OneChannel
TwoChannel
DifferentialExpression
Preprocessing
QualityControl
affy
16.9 years ago
Amin Moghaddasi
▴ 130
12 results • Page
1 of 1
Recent ...
Replies
Comment: DESeq filtering specific to contrasts
by
Michael Love
41k
It will likely not filter it out, but really the per-dataset details would affect the results.
Comment: DESeq filtering specific to contrasts
by
Carlin95
• 0
Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…
Comment: FilterByExpr low counts with small sample size
by
Jonathan
▴ 10
Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Seyram M.
• 0
Thank you very much for your reply! I will do so. Kind regards, Seyram
Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
by
isaac.vock
• 0
Thank you for your response. I can confirm that setting `-t exon` and/or removing `-s 1` and adding `-O` has no impact on the number of suc…
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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