Biostar R packages

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r packages centos7 bioclite libxml2

updated 4.1 years ago by Pariksheet Nanda ▴ 110 • written 4.1 years ago by kai.karius ▴ 10

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r packages somaticsignatures variantannotation

updated 5.3 years ago by Martin Morgan 25k • written 5.3 years ago by solo7773 ▴ 10

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460

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R annotation bioconductor r packages

5.3 years ago mcaulfield • 0

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bioconductor r packages installation

updated 5.3 years ago by Martin Morgan 25k • written 5.3 years ago by Sara • 0

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website r packages importing

5.5 years ago george.carlisle • 0

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r packages submission

5.7 years ago Jurat Shahidin ▴ 70

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Bioconductor biocLite R packages oldversion

5.9 years ago svlachavas ▴ 780

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Comment: GO enrichment analysis on Solanum lycopersicum proteomics dataset (UniProt IDs) by Javan Okendo • 0

I managed to download the goa file now. I have the following question, I have differentially expressed proteins following DE analysis. I ca…

Comment: scater::plotHeatmap with swap_rownames gives error by enricoferrero ▴ 570

Thanks Guillame! That indeed works, and I see the logic behind it.

Comment: GO enrichment analysis on Solanum lycopersicum proteomics dataset (UniProt IDs) by shepherl 2.8k

try: http://ftp.ebi.ac.uk/pub/databases/GO/goa/proteomes/4144447.%5B_auris_B8441.goa

Comment: GO enrichment analysis on Solanum lycopersicum proteomics dataset (UniProt IDs) by Javan Okendo • 0

@guido I am having trouble downloading the goa annotation file, I have tried `wget ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/proteomes/41444…

Answer: Help with the beadarray package by Gordon Smyth 43k

Assuming that your ultimate aim is to do a gene expression analysis, the best way to process Ilumina beadarrays is via the idat files: ```…

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Comment: GO enrichment analysis on Solanum lycopersicum proteomics dataset (UniProt IDs)