Showing : RBGL • reset
3
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2
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2.5k
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Finding nearest neighbors of given hub gene in a co-expression network module
wgcna rbgl graph coexpression hub genes
updated 8.1 years ago by ★ 3.0k • written 8.1 years ago by ▴ 150
2
votes
4
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1.9k
views
Problems installing RBGL in R
rbgl r package problem
updated 5.4 years ago by 25k • written 5.4 years ago by ▴ 20
2
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11
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2.0k
views
RBGL installation error
rbgl
8.0 years ago Julian Gehring ★ 1.3k
2
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4
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4.6k
views
Unable to upload an App in shinyapps.io with bioconductor packages
shinny graph RBGL
updated 12 months ago by ▴ 10 • written 3.2 years ago by • 0
1
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2
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839
views
Unable to install RBGL in Bioconductor 3.10 release
rbgl bh
updated 4.5 years ago by 25k • written 4.5 years ago by ▴ 90
1
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4
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1.2k
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Non-Redundant Edges in Connected Components
RBGL
updated 5.9 years ago by 16k • written 5.9 years ago by ★ 1.5k
1
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1
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2.0k
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Installation error RBGL 1.42
software error installation RBGL compilation error linux cluster
9.2 years ago agroff • 0
0
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2
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1.2k
views
pathway analysis package
RBGL KEGGSOAP RBGL KEGGSOAP
updated 19.4 years ago by 21k • written 19.4 years ago by ▴ 60
0
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6
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1.4k
views
Many missing GO terms from GOHyperG call using mgu74av2
GO Survival hgu95av2 mgu74av2 Ruuid annotate multtest affy graph annaffy RBGL GOstats
updated 18.8 years ago by ★ 7.4k • written 18.8 years ago by ★ 1.4k
0
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1
reply
887
views
rbind in annaffy problem
GO hgu95av2 rat2302 cdf annotate affy graph annaffy RBGL GOstats biomaRt GO hgu95av2
updated 18.4 years ago by 65k • written 18.4 years ago by ▴ 890
0
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0
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659
views
Graph Layout
graph RBGL graph RBGL
18.2 years ago Li Long ▴ 120
0
votes
1
reply
860
views
RBGL package
RBGL RBGL
updated 18.0 years ago by ★ 7.4k • written 18.0 years ago by ▴ 10
0
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1
reply
739
views
johnson.all.pairs.sp (RBGL) causes R to hang with certain graphs
graph RBGL graph RBGL
updated 18.0 years ago by ▴ 50 • written 18.0 years ago by ★ 7.4k
0
votes
14
replies
2.7k
views
RBGL 1.8.1 installation error on linux
Cancer graph RBGL Cancer graph RBGL
updated 17.9 years ago by ▴ 510 • written 18.0 years ago by ▴ 300
0
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0
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993
views
RBGL, shortest paths, edge weights, and the new graph class
SystemsBiology graph RBGL SystemsBiology graph RBGL
17.9 years ago Seth Falcon ★ 7.4k
0
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0
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741
views
R hangs when applying johnson.all.pairs.sp (in library RBGL) to some graphs
graph RBGL graph RBGL
17.9 years ago Li.Long@isb-sib.ch ▴ 510
0
votes
2
replies
1.3k
views
problem with latest version of graph
GO annotate genefilter multtest affy graph Rgraphviz RBGL GOstats affyio affycoretools
17.9 years ago Kimpel, Mark W ▴ 890
0
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0
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1.1k
views
blocking in limma gives an estimability problem
GO hgu95av2 Ruuid multtest affy graph limma RBGL qvalue Category affyio GO hgu95av2
17.9 years ago Pedro López Romero ▴ 360
0
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1
reply
1.3k
views
[R] problem loading affycoretools - solved!
Biobase Ruuid genefilter multtest graph limma gcrma matchprobes affyPLM RBGL simpleaffy
updated 17.7 years ago by ★ 7.4k • written 17.7 years ago by ★ 2.2k
0
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2
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1.0k
views
error with GOHyperG
drosophila2 cdf Biobase annotate genefilter multtest RBGL GOstats drosophila2 cdf RBGL
updated 17.7 years ago by ★ 7.4k • written 17.7 years ago by ▴ 10
0
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3
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2.0k
views
Situation of the legend in the plotPCA of the affycoretools library
GO Survival cdf annotate genefilter multtest affy graph limma RBGL GOstats Category GO
updated 17.6 years ago by 65k • written 17.6 years ago by ▴ 350
0
votes
5
replies
1.5k
views
error coercing an exprSet to ExpressionSet
GO cdf Biobase annotate multtest affy limma RBGL GOstats Category affycoretools GO cdf
updated 17.4 years ago by ★ 7.4k • written 17.4 years ago by ▴ 890
0
votes
0
replies
830
views
RBGL installation on Ubuntu 6.10
RBGL RBGL
17.4 years ago lgautier@altern.org ▴ 950
0
votes
11
replies
2.7k
views
trouble hacking plotPCA
GO Survival Biobase genefilter affy affydata graph limma gcrma matchprobes affyPLM RBGL
updated 17.4 years ago by ▴ 10 • written 17.4 years ago by ★ 2.2k
0
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2
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1.6k
views
problem with hist.default in affystart in package affycoretools
GO cdf annotate affy limma RBGL simpleaffy GOstats Category affyQCReport affyio GO cdf
updated 17.3 years ago by 65k • written 17.3 years ago by ▴ 890
0
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6
replies
1.6k
views
GOstats and custom annotation problem
Annotation GO annotate genefilter graph AnnBuilder RBGL GOstats Category Annotation GO
updated 17.3 years ago by 21k • written 17.3 years ago by ▴ 310
0
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4
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1.3k
views
error with AffyQCReport
cdf annotate affy limma RBGL simpleaffy GOstats affyQCReport cdf annotate affy limma
updated 17.2 years ago by ★ 13k • written 17.2 years ago by ▴ 830
0
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1
reply
1.1k
views
Problem with limma2biomaRt and MBNI custom CDF
Annotation GO cdf DynDoc genefilter tkWidgets affy graph limma RBGL biomaRt Category
updated 17.2 years ago by 65k • written 17.2 years ago by ▴ 300
0
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2
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1.6k
views
can't load affycoretools because GOstats is broken. Can I load affycoretools without dependencies to use some functions?
GO Survival Biobase genefilter affy limma RBGL GOstats Category affyio affycoretools GO
17.2 years ago Mark W Kimpel ▴ 830
0
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0
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1.1k
views
affy u133x3p chip
Microarray Genetics GO Preprocessing Cancer CGH cdf probe annotate genefilter affy RBGL
17.1 years ago Dick Beyer ★ 1.4k
0
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0
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1.1k
views
RBGL: bfs & dfs with directed graphs
GO Biobase annotate geneplotter graph Rgraphviz annaffy RBGL convert GO Biobase graph
17.0 years ago stephen edwards ▴ 10
0
votes
3
replies
2.0k
views
hyperGTest, KEGG
Annotation Pathways multtest siggenes RBGL GOstats Annotation Pathways multtest siggenes
updated 17.0 years ago by ★ 7.4k • written 17.0 years ago by ▴ 80
0
votes
14
replies
2.4k
views
GOStats/RBGL installation error
RBGL GOstats RBGL GOstats
updated 16.5 years ago by ▴ 170 • written 16.5 years ago by ▴ 260
0
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0
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934
views
Problems with k-cliq definition and calculations using RBGL package
Proteomics graph RBGL Proteomics graph RBGL
16.5 years ago Chanchal Kumar ▴ 130
0
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6
replies
2.0k
views
Problems building RBGL package
RBGL RBGL
15.8 years ago Rasmus Ory Nielsen ▴ 50
0
votes
2
replies
1.2k
views
affycoretools vennSelect problem
GO Survival annotate genefilter affy graph gcrma annaffy RBGL GOstats biomaRt affyio
updated 15.8 years ago by 65k • written 15.8 years ago by ▴ 30
0
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0
replies
1.1k
views
affycoretools vennSelect problem
Annotation GO Survival probe annotate genefilter affy graph limma gcrma annaffy RBGL
15.8 years ago Nick Henriquez ▴ 20
0
votes
4
replies
1.5k
views
RBGL installation issues
RBGL GOstats RBGL GOstats
updated 15.6 years ago by ▴ 510 • written 15.6 years ago by ▴ 930
0
votes
0
replies
1.1k
views
Problem installing RBGL 1.20.0 using Fedora 11 x64 and gcc 4.4.1
RBGL RBGL
14.6 years ago Philipp Antczak ▴ 10
0
votes
4
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1.8k
views
problem on install package RBGL
RBGL RBGL
updated 14.5 years ago by ▴ 510 • written 14.5 years ago by ▴ 60
0
votes
3
replies
1.7k
views
RBGL fails to compile / install
RBGL GOstats RBGL GOstats
updated 14.3 years ago by ★ 7.4k • written 14.3 years ago by ▴ 630
0
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1
reply
1.3k
views
CRAN packages maintained by you
hexbin gpls RBGL impute Icens hopach maanova RLMM CORREP cycle hexbin gpls RBGL Icens
updated 12.5 years ago by ▴ 430 • written 12.5 years ago by ▴ 10
0
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1
reply
1.6k
views
deprecated head file for RBGL and compilation failure
graph RBGL PROcess graph RBGL PROcess
updated 12.0 years ago by 6.7k • written 12.0 years ago by ★ 13k
0
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5
replies
2.0k
views
'citation("RBGL")' command produces package not found error
RBGL RBGL
updated 11.9 years ago by 6.7k • written 11.9 years ago by ▴ 30
0
votes
0
replies
990
views
changes to RBGL
graph RBGL graph RBGL
11.9 years ago Vincent J. Carey, Jr. 6.7k
0
votes
2
replies
1.2k
views
Issues while installing RBGL package
RBGL RBGL
updated 11.2 years ago by 6.7k • written 11.2 years ago by ▴ 10
0
votes
6
replies
3.5k
views
Directed MST (Edmond's Algorithm)
GO graph RBGL GO graph RBGL
updated 10.5 years ago by ★ 13k • written 10.5 years ago by ▴ 90
0
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1
reply
1.0k
views
Problem installing RBGL
rbgl boost
8.1 years ago tzintzuni • 0
0
votes
0
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1.1k
views
UPDATE: a problem with Metadat package: hgu133a2 ----- Fwd: RE: Should BE964473 be mapped to Hs. 333958 or Hs. 282260?
Annotation GO Cancer hgu95av2 hu6800 probe annotate affy graph RBGL GOstats Annotation
18.5 years ago Shi, Tao ▴ 720
0
votes
0
replies
510
views
Removing edges from a complete graph to make it a planar maximally filtered graph
RBGL
2.2 years ago jackson0696 • 0
50 results • Page 1 of 1
Recent ...
Replies
Comment: get BM error by James W. MacDonald 65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
Comment: get BM error by Fara • 0
Thank you for your response. The primary reason for translating Ensembl IDs into Entrez Gene IDs is to perform KEGG (Kyoto Encyclopedia of…
Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by James W. MacDonald 65k
That's weird. I don't have any problem at all generating the `OrgDb` on my box. How big is the gene2pubmed.gz file? I get this: ``` gzip -…
Answer: get BM error by James W. MacDonald 65k
The genes you present are orthologous mappings from D. rerio to other teleost fishes, so it is probably going to be difficult to map to NCB…
Answer: How to retrieve gene ontology GO class from gene list? by James W. MacDonald 65k
You can also use a combination of the `org.Hs.eg.db` and `GO.db` packages. ``` > library(GO.db) > library(org.Hs.eg.db) > go <- m…
Votes
Answer: get BM error
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
Comment: Different Shrunk Log2FC according with reference
Reproducibility issue with scran together with lapply and BiocParallel
C: SGSeq: moving toward diffex from SGSeq analysis
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