Bioconductor RCy3

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Cytoscape RCy3 RCy

updated 3 months ago by alex.pico ▴ 20 • written 3 months ago by David R ▴ 90

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813

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Network RCy3

updated 3 months ago by alex.pico ▴ 20 • written 4 months ago by David R ▴ 90

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281

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RCy3 Cytohubba

updated 3 months ago by alex.pico ▴ 20 • written 3 months ago by jzhan067 ▴ 10

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Cytoscape RCy3 Networkvisualization WGCNA

11 months ago Ortega-C ▴ 10

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579

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RCy3

updated 15 months ago by alex.pico ▴ 20 • written 15 months ago by adR ▴ 30

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1.2k

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GEOquery CancerData limma RCy3 CancerInSilico

updated 2.4 years ago by Steve Lianoglou ★ 13k • written 2.4 years ago by Caitlin ▴ 50

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852

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rcy3

updated 3.3 years ago by alex.pico ▴ 20 • written 4.3 years ago by hanna226613 ▴ 10

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Cytoscape Pathways Wikipathways rWikiPathways RCy3

3.4 years ago • updated 3.3 years ago Emilia ▴ 30

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720

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RCy3 Cytoscape R Newick Bioconductor

updated 3.3 years ago by alex.pico ▴ 20 • written 3.8 years ago by ellisjc • 0

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1.4k

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RCy3 Cytoscape Rgraphviz GOstats

4.9 years ago Matthew Thornton ▴ 350

10 results • Page 1 of 1

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Comment: DESeq filtering specific to contrasts by Carlin95 • 0

But wouldn't this result in a different gene set for each analysis stratification? How can you then compare if maybe gene x comes up in Tim…

Comment: Reading huge bismark coverage files using bbseq::read.bismark by jacques.imbert • 0

Hello, Using nThread = 1L fixed the issue. Thank you for your time and help.

Comment: Error in champ.load(): The following specified files do not exist by Basti ▴ 760

The error stems from the Basename column, please see solution here : https://support.bioconductor.org/p/p132482/

Comment: FilterByExpr low counts with small sample size by Gordon Smyth 50k

As always, it helps to see code. Are you running `voom` or `voomLmFit`? Did you run `normLibSizes()` in edgeR prior to `voom`? Are you star…

Comment: Batch correction and repeated measures by Gordon Smyth 50k

In your code, it was clear that `expr.mat` was a matrix rather than a DGEList, so it has to be a count matrix. If you have a DGEList object…

Votes

Comment: Reading huge bismark coverage files using bbseq::read.bismark

Answer: Reading huge bismark coverage files using bbseq::read.bismark

Answer: How many of my genes from my gene list are in each KEGG pathway?

Comment: Light difference when using coef vs omit a group when compare 3 groups.

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