Bioconductor RCy3

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1.4k

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RCy3 Cytoscape Rgraphviz GOstats

4.9 years ago Matthew Thornton ▴ 350

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1.3k

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GEOquery CancerData limma RCy3 CancerInSilico

updated 2.4 years ago by Steve Lianoglou ★ 13k • written 2.4 years ago by Caitlin ▴ 50

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1.3k

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Cytoscape Pathways Wikipathways rWikiPathways RCy3

3.4 years ago • updated 3.3 years ago Emilia ▴ 30

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1.1k

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Cytoscape RCy3 Networkvisualization WGCNA

11 months ago Ortega-C ▴ 10

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854

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rcy3

updated 3.3 years ago by alex.pico ▴ 20 • written 4.3 years ago by hanna226613 ▴ 10

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818

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Network RCy3

updated 3 months ago by alex.pico ▴ 20 • written 4 months ago by David R ▴ 90

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724

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RCy3 Cytoscape R Newick Bioconductor

updated 3.3 years ago by alex.pico ▴ 20 • written 3.8 years ago by ellisjc • 0

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580

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RCy3

updated 15 months ago by alex.pico ▴ 20 • written 15 months ago by adR ▴ 30

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283

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RCy3 Cytohubba

updated 3 months ago by alex.pico ▴ 20 • written 3 months ago by jzhan067 ▴ 10

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258

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Cytoscape RCy3 RCy

updated 3 months ago by alex.pico ▴ 20 • written 4 months ago by David R ▴ 90

10 results • Page 1 of 1

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Answer: Cannabis and KEGGgraph by deeenes ▴ 30

Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…

Answer: RNAseq:Technical replicates from different batches by Gordon Smyth 50k

I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…

Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param by russ.bainer ▴ 10

Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…

Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Chris • 0

Hi Robert, If I don't want to use all pathway in c2 gene set but only a few pathways of interested, how can I do that? So we try to get a …

Comment: How to retrieve detailed regression results from deseq2 by Weiqian ▴ 10

Hi Michael, thanks for the answer! I'll have a look : )

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Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

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Popular Question to James W. MacDonald 65k