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RLE
•
reset
2
votes
5
replies
1.4k
views
making a RleViewsList object gets slow with many chromosomes
views
iranges
rle
9.2 years ago
Janet Young
▴ 740
6
votes
3
replies
2.4k
views
how does coverage() works
biostrings
coverage
rle
iranges
7.9 years ago
likeeatingpizza
▴ 10
3
votes
7
replies
2.0k
views
Add up RLEs that are in lists?
RLE
GenomicFeatures
rnaseq
updated 9.0 years ago by
Hervé Pagès
16k • written 9.0 years ago by
gen
▴ 30
2
votes
4
replies
1.8k
views
summing integer RLE
rle
list
irange
grangeslist
updated 9.1 years ago by
Chris Seidel
▴ 80 • written 9.1 years ago by
gen
▴ 30
2
votes
6
replies
2.8k
views
Shrink or Expand RLE
RLE
iranges
granges
coverage
updated 9.0 years ago by
Martin Morgan
25k • written 9.0 years ago by
gen
▴ 30
0
votes
1
reply
1.4k
views
extract RLE normalized table
rle
normalization
table
updated 8.5 years ago by
Steve Lianoglou
★ 13k • written 8.5 years ago by
aiko
• 0
0
votes
1
reply
1.6k
views
Efficient coverage calculation with RleList and GRanges
granges
Rle
coverage
View
mean
updated 7.8 years ago by
Michael Lawrence
★ 11k • written 7.8 years ago by
Christian Ruckert
▴ 170
0
votes
3
replies
1.5k
views
Efficiently construct GRanges/IRanges from Rle vector
Rle
granges
iranges
7.5 years ago
my4
▴ 10
2
votes
4
replies
1.4k
views
Generic functions for DataFrames of Rle objects ?
DataFrame
Rle
generic
expression table
updated 9 months ago by
Hervé Pagès
16k • written 6.9 years ago by
Charles Plessy
▴ 180
7
votes
4
replies
1.6k
views
From RleList to RleArray
delayedarray
rlelist
rle
updated 6.5 years ago by
Peter Hickey
▴ 740 • written 6.5 years ago by
davide risso
▴ 950
1
vote
1
reply
1.1k
views
Subsetting Rle with ORF-sequence-positions by the 3 frames
Rle
Big data
coverageByTranscript
6.0 years ago
hauken_heyken
▴ 80
1
vote
1
reply
3.0k
views
What does the relative-log expression normalization mean in the deseq2 wrapper function ?
rle
deseq2
normalization
updated 5.9 years ago by
Michael Love
41k • written 5.9 years ago by
Aurora
▴ 20
0
votes
2
replies
1.2k
views
Error: invalid class "VRanges" object
variantannotation
VRanges
R
Rle
updated 5.8 years ago by
Valerie Obenchain
★ 6.8k • written 5.8 years ago by
Jayendra Shinde
• 0
1
vote
1
reply
948
views
deseq2 RLE normalization
RLE
normalization
deseq2
updated 13 months ago by
ATpoint
★ 4.0k • written 13 months ago by
SH
• 0
1
vote
1
reply
2.2k
views
Computing NUSE and RLE scores
affyPLM
RLE
NUSE
updated 9.2 years ago by
Sean Davis
21k • written 9.2 years ago by
beverly893
▴ 10
1
vote
2
replies
1.1k
views
Summary statistics of RleListViews object
rle
Views
9.2 years ago
Sean Davis
21k
0
votes
1
reply
1.7k
views
RLE plot of DESeq2 normalisation / extract matrix of normalised counts from DESeqDataSet
deseq2
RLE
updated 4.2 years ago by
Michael Love
41k • written 4.2 years ago by
f_pardow
• 0
0
votes
1
reply
823
views
Resources to learn about s4 object extension/inheritance, custom print methods, and new operations
S4
Rcpp
InteractionSet
IRanges
Rle
updated 3.9 years ago by
Aaron Lun
★ 28k • written 3.9 years ago by
lklei001
• 0
0
votes
0
replies
952
views
Avoid rotating vector when doing arithmetic on different length IRanges RleList entries
iranges
s4vectors
rle
rlelist
5.8 years ago
endrebak85
▴ 40
0
votes
2
replies
1.1k
views
boxplot on an Rle object?
Rle
boxplot
9.2 years ago
Johannes Rainer
★ 2.0k
20 results • Page
1 of 1
Recent ...
Replies
Comment: significant difference of p-values with dream() after updating VariancePartition
by
gabriel.hoffman
▴ 100
See variancePartition updates for [v1.33.11](https://diseaseneurogenomics.github.io/variancePartition/news/index.html#variancepartition-133…
Comment: A ComBat-seq issue: the covariates are confounded
by
W. Evan Johnson
▴ 850
This is only partially confounded because there is overlap between the batches -- they both have GFP controls that can be used to remove ba…
Answer: Different number of exons in reference genome affects DEXSeq analysis
by
Alejandro Reyes
★ 1.9k
Likely the new annotation that you are using has more annotated isoforms, and thus the exons are splitted into more disjoint exonic bins. I…
Answer: Adding columns to DEXSeqResults object
by
Alejandro Reyes
★ 1.9k
I'd have a look into the match function, that could give you a mapping between the ids in the dxr1 object and your data frame of gene symbo…
Answer: rlog transformation
by
Michael Love
41k
It is dependent on the other samples in the dataset.
Votes
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos
Using GRanges and IRanges to simply get all chromosome data
A: Using GRanges and IRanges to simply get all chromosome data
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