Bioconductor RMarkdown

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rmarkdown rstudio knitr

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package development bioconductor rstudio rmarkdown vignettes

6.4 years ago clarisbaby • 0

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rmarkdown package updates

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biocstyle Rmarkdown Tutorial

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BiocStyle vignettes rmarkdown latex News

6.7 years ago Andrzej Oleś ▴ 750

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rmarkdown suppressWarning warning

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BiocWorkflowTools rmarkdown

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BrowseSeqs DECIPHER notebook rmarkdown

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rmarkdown knitr

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ReportingTools RNA-Seq RMarkdown

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BiocWorkflowTools rmarkdown

3.9 years ago helucro ▴ 70

11 results • Page 1 of 1

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Answer: OrgDb for maize by Guido Hooiveld ★ 3.9k

I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …

Comment: Theoretical WGCNA Question by Garrett • 0

Thanks Peter!

Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0

Thank you!

Comment: FGSEA pre-ranked input in increasing order or decreasing by alserg ▴ 240

They are reorder in the decreasing order.

Comment: significant difference of p-values with dream() after updating VariancePartition by Le • 0

Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…

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Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

Comment: DEXSeq DEXSeqDataSet count matrix duplication

Comment: Error in champ.load(): The following specified files do not exist

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