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RMarkdown
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News:
Updates to BiocStyle formatting
BiocStyle
vignettes
rmarkdown
latex
News
6.7 years ago
Andrzej Oleś
▴ 750
6
votes
1
reply
3.2k
views
Tutorial:
BoF "Writing papers in Rmarkdown, BiocStyle... (and books, posters)"
biocstyle
Rmarkdown
Tutorial
6.7 years ago
Wolfgang Huber
★ 13k
3
votes
2
replies
1.7k
views
Issue with pandoc-citeproc when rendering the f1000 article Rmd file from BiocWorkFlowTools
BiocWorkflowTools
rmarkdown
updated 6.8 years ago by
Andrzej Oleś
▴ 750 • written 6.8 years ago by
Leonardo Collado Torres
★ 1.0k
3
votes
3
replies
2.0k
views
Extension to knitr/Rmarkdown to ignore only specific warnings (not all) in a chunk
rmarkdown
suppressWarning
warning
updated 14 months ago by
Mike Smith
★ 6.5k • written 2.4 years ago by
Wolfgang Huber
★ 13k
3
votes
3
replies
16k
views
Error in Knit R Markdown document (could not find function "Biocexptpkg")
rmarkdown
rstudio
knitr
7.5 years ago
Jon Bråte
▴ 250
1
vote
2
replies
1.4k
views
Display BrowseSeqs output in R Notebook?
BrowseSeqs
DECIPHER
notebook
rmarkdown
updated 4.6 years ago by
Erik Wright
▴ 150 • written 4.6 years ago by
lauren.fitch
• 0
1
vote
1
reply
1.1k
views
Best practices for sharing RMarkdown-based supplemental PDFs?
rmarkdown
knitr
updated 5.2 years ago by
Aaron Lun
★ 28k • written 5.2 years ago by
Keith Hughitt
▴ 180
1
vote
1
reply
1.1k
views
Having issues mapping gene Ids during ReportingTools::publish() from Bioconductor.
ReportingTools
RNA-Seq
RMarkdown
updated 3.6 years ago by
James W. MacDonald
65k • written 3.6 years ago by
anthony.nash
▴ 20
0
votes
2
replies
3.6k
views
Error in file.choose() : file choice cancelled
package development
bioconductor
rstudio
rmarkdown
vignettes
6.4 years ago
clarisbaby
• 0
0
votes
2
replies
3.4k
views
installation of package 'rmarkdown' had non-zero exit status
rmarkdown
package updates
updated 7.7 years ago by
James W. MacDonald
65k • written 7.7 years ago by
tarek.mohamed
▴ 10
0
votes
0
replies
611
views
Author footnotes in BiocWorkflowTools::f1000_article template
BiocWorkflowTools
rmarkdown
3.9 years ago
helucro
▴ 70
11 results • Page
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Replies
Comment: How to retrieve detailed regression results from deseq2
by
Weiqian
▴ 10
Hi Michael, thanks for the answer! I'll have a look : )
Comment: DESeq filtering specific to contrasts
by
Michael Love
41k
It will likely not filter it out, but really the per-dataset details would affect the results.
Comment: DESeq filtering specific to contrasts
by
Carlin95
• 0
Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…
Comment: FilterByExpr low counts with small sample size
by
Jonathan
▴ 10
Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Seyram M.
• 0
Thank you very much for your reply! I will do so. Kind regards, Seyram
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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