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RMySQL
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Sequencing database tool in R: tracking Sanger and NGS of large-scale directed evolution projects
rmysql
fastq
seqinr
ngs
sangerseqr
6.0 years ago
JoeMG
• 0
0
votes
1
reply
837
views
Update package permission Everytime
software error
R
bioconductor
rmysql
6.0 years ago
vivekr
• 0
0
votes
5
replies
1.9k
views
error when using ensembldb with a MySQL server
ensembldb
rmysql
updated 6.3 years ago by
James W. MacDonald
65k • written 6.3 years ago by
Didi
▴ 10
0
votes
0
replies
1.2k
views
Job:
Full Time Bioinformatics Software Developer
php
javascript
rmysql
R
Job
7.2 years ago • updated 7.0 years ago
Luo Weijun
★ 1.6k
2
votes
2
replies
2.2k
views
Anybody know if this will change: package ‘RMySQL’ is not available (for R version 3.1.2)
rmysql
R version 3.1.2
3.1.2
package updates
9.4 years ago
milorobertsmith
• 0
8
votes
7
replies
1.8k
views
RMySQL availiability with Bioconductor 3.0
Install
RMySQL
Windows
updated 9.6 years ago by
Martin Morgan
25k • written 9.6 years ago by
Panagiotis Moulos
▴ 30
6 results • Page
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Comment: Which input file is used for DGEList in EgdeR?
by
Michael Love
41k
"gene_counts_length_scaled.tsv file generated by the nf-core be exactly that?" No that is the counts scaled by the length. Counts + offset…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Michael Love
41k
These genes are fine. They are just the ones where, by chance, the sample variance is below the sample mean. It happens. DESeq2 brings thes…
Comment: DEG with low counts
by
Michael Love
41k
These counts are too low, only a few samples above a count of 10. So for typical RNA-seq data that is underpowered to call differences. It…
Comment: DESeq filtering specific to contrasts
by
Michael Love
41k
If the counts are too low it in one group then you can't make the comparison either way (whether they are filtered out or just under-powere…
Comment: Estimating Cell Counts for EPIC V2 array data
by
normawiedman059
• 0
0 [103] spam_2.9-1 doParallel_1.0.17 iterators_1.0.14 [106] foreach_1.5.2 beeswarm_0.4.0 tgp_2.4-20 [109] beanplot_1.3.1 fpc_2.2-9 dbscan_1…
Votes
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
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