Bioconductor RNA-SEQ

41

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44

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11k

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FDR p-value DESeq RNA-Seq

updated 6.8 years ago by Wade Davis ▴ 60 • written 7.4 years ago by yjiangnan ▴ 10

10

votes

14

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9.1k

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deseq2 rna-seq

8.2 years ago • updated 8.1 years ago anand_mt ▴ 90

1

vote

14

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11k

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deseq rna-seq

9.6 years ago rodriguez.varenka • 0

1

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13

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6.5k

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deseq2 rna-seq normalization

8.5 years ago gil.hornung • 0

0

votes

13

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2.1k

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DESeq2 deseq2 rna-seq paired samples

updated 7.5 years ago by Michael Love 42k • written 7.5 years ago by solgakar@bi.technion.ac.il ▴ 90

1

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12

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1.6k

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RNA-Seq edger fitted values differential expression normalization

updated 5.3 years ago by Gordon Smyth 51k • written 5.3 years ago by David R ▴ 90

18

votes

12

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4.0k

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edgeR deseq2 rna-seq independent filtering

updated 9.3 years ago by Michael Love 42k • written 9.3 years ago by Ryan C. Thompson ★ 7.9k

5

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12

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6.0k

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rna-seq deseq2

updated 3.0 years ago by AZ ▴ 30 • written 7.0 years ago by gtho123 ▴ 40

9

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12

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8.4k

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deseq2 edgeR rna-seq

updated 5 months ago by Elizabeth • 0 • written 9.3 years ago by gthm ▴ 30

15

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12

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2.8k

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deseq2 ZINB-WaVE single cell RNA-seq differential expression

updated 6.2 years ago by Michael Love 42k • written 6.2 years ago by rory.kirchner ▴ 60

3

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12

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5.3k

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limma batch effect rna-seq

updated 6.0 years ago by Peter Langfelder ★ 3.0k • written 6.0 years ago by Mike A ▴ 10

4

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11

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2.6k

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summarizeoverlaps summarizedexperiment count matrix low counts rna-seq

updated 8.7 years ago by Valerie Obenchain ★ 6.8k • written 8.7 years ago by shania90.lk ▴ 10

24

votes

11

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19k

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limma voom limma voom rna-seq quantile normalization

updated 8.7 years ago by Gordon Smyth 51k • written 8.7 years ago by lassancejm ▴ 50

9

votes

11

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5.8k

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tximport Kallisto rna-seq

updated 7.6 years ago by pablo_garcia05 ▴ 20 • written 8.5 years ago by cguzman.bioinformatics ▴ 10

0

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11

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1.8k

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rnaseqDTU DRIMseq DEXseq rna-seq

5.5 years ago saddamhusain77 • 0

2

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11

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3.4k

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salmon tximeta rna-seq

4.9 years ago • updated 4.8 years ago mico • 0

5

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11

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3.7k

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deseq2 R logfoldchange rna-seq

5.4 years ago • updated 5.2 years ago pierre.marin • 0

3

votes

11

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2.1k

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RNA-seq scRNA-seq

updated 4.7 years ago by Aaron Lun ★ 28k • written 4.7 years ago by Bogdan ▴ 670

2

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10

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2.0k

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coseq rna-seq

updated 5.6 years ago by andrea.rau ▴ 80 • written 5.6 years ago by varunorama • 0

0

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10

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2.6k

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isoformswitchanalyzeR rna-seq splice-variants

written 5.5 years ago by saddamhusain77 • 0

12

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10

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7.5k

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gsva gene set variation analysis normalization transformation rna-seq

6.5 years ago • updated 5.7 years ago rached ▴ 60

2

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10

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10k

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pvalue adjusted pvalue r bonferroni rna-seq

updated 8.0 years ago by Michael Love 42k • written 8.0 years ago by fromhj304 ▴ 10

2

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10

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2.3k

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edgeR RNA-Seq design matrix multifactorial design

8.6 years ago Yogender Gowtham ▴ 20

2

votes

9

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2.3k

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software error cuumeRbund rna-seq

updated 9.1 years ago by Martin Morgan 25k • written 9.1 years ago by Angel ▴ 40

1

vote

9

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2.2k

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RATs RNA-Seq Isoforms DTU expression

updated 5.3 years ago by fruce_ki ▴ 20 • written 5.3 years ago by UserAnonyme • 0

14

votes

9

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16k

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deseq2 deseq rna-seq

9.8 years ago gavrielmatt ▴ 30

5

votes

9

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2.2k

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GSVA RNA-Seq RSEM Expected_Count

2.2 years ago Yang Shi ▴ 10

3

votes

9

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2.6k

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RNA-seq tximeta

3.8 years ago Pufall, Miles A ▴ 30

10

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9

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2.0k

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limma-voom voom limma rna-seq

updated 7.0 years ago by Aaron Lun ★ 28k • written 7.0 years ago by vd4mmind • 0

4

votes

9

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1.6k

views

rna-seq edger

updated 7.9 years ago by Ryan C. Thompson ★ 7.9k • written 7.9 years ago by es874 ▴ 20

14

votes

9

replies

4.1k

views

limma rna-seq removebatcheffect()

updated 6.7 years ago by alakatos ▴ 130 • written 8.5 years ago by Ekarl2 ▴ 80

2

votes

8

replies

1.9k

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Salmon RNA-Seq Transcript variant analysis

updated 5.5 years ago by Michael Love 42k • written 5.5 years ago by saddamhusain77 • 0

1

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8

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3.4k

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RNA-seq edgeR estimatedispersions bacteria

9.7 years ago Mauve • 0

11

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8

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9.4k

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WGCNA RNA-Seq DESeq2 voom removebatcheffect()

updated 8.1 years ago by Peter Langfelder ★ 3.0k • written 8.1 years ago by gokce.ouz ▴ 70

4

votes

8

replies

23k

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deseq2 vst rna-seq machine-learning

updated 5.2 years ago by Michael Love 42k • written 5.2 years ago by Manik Garg ▴ 20

1

vote

8

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2.1k

views

rna-seq time series patient limma-voom

updated 6.1 years ago by Aaron Lun ★ 28k • written 6.1 years ago by aec ▴ 90

0

votes

8

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2.5k

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bioconductor biomart granges rna-seq

updated 7.2 years ago by Michael Lawrence ★ 11k • written 7.2 years ago by seungjoon.kim • 0

0

votes

8

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2.4k

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rna-seq deseq2 deseq R

updated 6.2 years ago by Michael Love 42k • written 6.2 years ago by arun.thirumaran • 0

4

votes

8

replies

1.4k

views

edger rna-seq matrix

updated 4.8 years ago by James W. MacDonald 67k • written 4.8 years ago by alihakimzadeh73 • 0

3

votes

8

replies

3.8k

views

deseq2 rna-seq

updated 4.4 years ago by Kevin Blighe ★ 4.0k • written 4.4 years ago by thjnant ▴ 10

1

vote

8

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8.4k

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deseq2 R rna-seq design

updated 3.8 years ago by Michael Love 42k • written 4.9 years ago by raquelgarza95 • 0

4

votes

8

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2.6k

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go software error topgo rna-seq

updated 20 months ago by James W. MacDonald 67k • written 4.4 years ago by morteza.aslanzadeh ▴ 30

0

votes

7

replies

2.7k

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kallisto tximport RNA-Seq across species

updated 2.9 years ago by nicolette.sipperly • 0 • written 7.4 years ago by urjaswita ▴ 40

2

votes

7

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2.3k

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RNA-seq Salmon tximport

updated 5.1 years ago by James W. MacDonald 67k • written 5.1 years ago by woojoy14 • 0

8

votes

7

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5.8k

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limma duplicateCorrelation rna-seq technical replicates biological replicates

updated 5.0 years ago by Aaron Lun ★ 28k • written 5.0 years ago by paul.alto ▴ 50

3

votes

7

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5.8k

views

sva rna-seq

updated 6.5 years ago by Sandip Darji ▴ 30 • written 8.7 years ago by kmuench ▴ 40

6

votes

7

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4.3k

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rnaseq rna-seq linear model limma

updated 7.6 years ago by Aaron Lun ★ 28k • written 7.6 years ago by Thomas Sandmann ▴ 90

5

votes

7

replies

3.9k

views

deseq2 rna-seq design matrix deseq

updated 6.0 years ago by Michael Love 42k • written 6.0 years ago by thindmarsmission ▴ 10

3

votes

7

replies

2.0k

views

DESeq2 twins design formula RNA-seq

7.0 years ago Simone • 0

5

votes

7

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2.6k

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limma voom RNA-seq

updated 5.5 years ago by James W. MacDonald 67k • written 5.5 years ago by biomiha ▴ 20