Bioconductor RNA-SEQ

Showing : RNA-SEQ • reset

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isoformswitchanalyzeR rna-seq splice-variants

written 5.0 years ago by saddamhusain77 • 0

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1.2k

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filtering RNA-Seq CPM edgeR filterByExpr

updated 10 months ago by Gordon Smyth 50k • written 10 months ago by mohammedtoufiq91 ▴ 10

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658

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RNA-seq DESeq2

6 months ago ar14g12 • 0

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833

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BatchEffect lfcshrink RNA-seq DESeq2

8 months ago Eva ▴ 10

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229

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rna-seq edgeR

updated 1 day ago by Gordon Smyth 50k • written 8 days ago by Netanel • 0

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1.5k

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GeneExpression GenomicFeatures RNA-Seq TPM

updated 7 months ago by Gordon Smyth 50k • written 7 months ago by gingergeiger22 • 0

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655

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rna-seq salmon fishpond swish

updated 10 months ago by Michael Love 41k • written 10 months ago by samuelcjx • 0

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687

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RNA-Seq normalization PCR_efficiency bias intrasample_comparison

updated 11 months ago by James W. MacDonald 65k • written 11 months ago by FedeXander • 0

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630

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DEXSeq RNA-seq DESeq2

updated 7 months ago by Alejandro Reyes ★ 1.9k • written 7 months ago by Alice • 0

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825

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RNA-Seq sequencer library_size sequency_depth multiplexing offtopic

updated 11 months ago by James W. MacDonald 65k • written 11 months ago by FedeXander • 0

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1.2k

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gage rna-seq pathwayanalysis

updated 11 months ago by Rob • 0 • written 3.4 years ago by microPhD • 0

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3.4k

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RNA-seq featureCounts ht-seq

written 3.7 years ago by ag1805x ▴ 80

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292

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RNA-Seq WGCNA Worms

4 months ago davca • 0

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2.2k

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Spike-in RNASeqR DESeq2 Normalization rna-seq

updated 7 months ago by manuel.fernandez • 0 • written 2.0 years ago by cicely.day • 0

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890

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correlation pearsoncorrelation rna-seq differential gene expression

updated 4 months ago by ATpoint ★ 4.0k • written 6.0 years ago by saad_k6 • 0

15 results • Page 1 of 1

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Comment: DEG with low counts by Rajat • 0

Dear Dr. Michael Thanks for you quick reply. I appreciate it. Attached is the plotcounts for one gene. I am experiencing like this in oth…

Comment: Light difference when using coef vs omit a group when compare 3 groups. by Chris • 0

Hi Gordon, thank you so much for your guide! I check my data as you said there is no difference in my data. This is the MDS plot at genes l…

Comment: How to correct for known and surrogate variables in DESeq2? by Michael Love 41k

To question 3: if you model technical variation using only ~group vs ~1, then it will be correlated with known technical variables, which y…

Answer: flowStats Search Error by shepherl 3.8k

We are aware of an issue with bioconductor.org search and are investigating. We apologize for an inconvenience this is causing.

Comment: How to correct for known and surrogate variables in DESeq2? by nhaus ▴ 30

Hey Crystal, did you end up getting advice? I am facing the exact same questions that you are having right now. Would be very grateful if y…

Votes

Answer: Light difference when using coef vs omit a group when compare 3 groups.

C: Add new columns to DESeqResults from text file by matching rownames.

Answer: geneList error in clusterprofiler

Comment: Memory errors using read.bismark?

Comment: Not fully paired differential gene expression analysis

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