Biostar RNA-SEQ

40

votes

44

replies

8.1k

views

FDR p-value DESeq RNA-Seq

updated 5.1 years ago by Wade Davis ▴ 60 • written 5.7 years ago by yjiangnan ▴ 10

18

votes

11

replies

15k

views

limma voom limma voom rna-seq quantile normalization

updated 7.0 years ago by Gordon Smyth 47k • written 7.0 years ago by lassancejm ▴ 50

18

votes

12

replies

2.8k

views

edgeR deseq2 rna-seq independent filtering

updated 7.6 years ago by Michael Love 39k • written 7.6 years ago by Ryan C. Thompson 7.8k

15

votes

12

replies

1.8k

views

deseq2 ZINB-WaVE single cell RNA-seq differential expression

updated 4.4 years ago by Michael Love 39k • written 4.4 years ago by rory.kirchner ▴ 60

14

votes

9

replies

2.8k

views

limma rna-seq removebatcheffect()

updated 5.0 years ago by alakatos ▴ 120 • written 6.8 years ago by Ekarl2 ▴ 80

14

votes

9

replies

12k

views

deseq2 deseq rna-seq

8.1 years ago gavrielmatt ▴ 30

12

votes

2

replies

2.7k

views

rna-seq edger mixed model random effects lme4

updated 6.6 years ago by Gordon Smyth 47k • written 6.6 years ago by Ekarl2 ▴ 80

11

votes

8

replies

7.1k

views

WGCNA RNA-Seq DESeq2 voom removebatcheffect()

updated 6.4 years ago by Peter Langfelder ★ 2.7k • written 6.4 years ago by gokce.ouz ▴ 70

10

votes

4

replies

3.3k

views

voom limma rna-seq differential gene expression

updated 6.5 years ago by Gordon Smyth 47k • written 6.5 years ago by rubi ▴ 110

10

votes

10

replies

4.1k

views

gsva gene set variation analysis normalization transformation rna-seq

4.8 years ago • updated 4.0 years ago rached ▴ 50

10

votes

9

replies

1.1k

views

limma-voom voom limma rna-seq

updated 5.2 years ago by Aaron Lun ★ 28k • written 5.2 years ago by vd4mmind • 0

9

votes

14

replies

6.8k

views

deseq2 rna-seq

6.5 years ago • updated 6.4 years ago anand_mt ▴ 80

9

votes

1

reply

2.8k

views

limma RNA-Seq

updated 7.3 years ago by Aaron Lun ★ 28k • written 7.3 years ago by arfranco ▴ 130

9

votes

11

replies

4.9k

views

tximport Kallisto rna-seq

updated 5.9 years ago by pablo_garcia05 ▴ 20 • written 6.8 years ago by cguzman.bioinformatics ▴ 10

8

votes

11

replies

6.3k

views

deseq2 edgeR rna-seq

updated 7.5 years ago by Gordon Smyth 47k • written 7.6 years ago by gthm ▴ 20

8

votes

2

replies

5.2k

views

deseq2 LRT RNA-Seq

updated 7.8 years ago by Michael Love 39k • written 7.8 years ago by solgakar@bi.technion.ac.il ▴ 90

8

votes

3

replies

2.0k

views

deseq2 rna-seq rnaseq interactions

updated 5.3 years ago by Michael Love 39k • written 5.3 years ago by red_bricks ▴ 50

7

votes

6

replies

475

views

deseq2 rna-seq

updated 2.6 years ago by Michael Love 39k • written 2.6 years ago by mbk0asis • 0

7

votes

7

replies

1.0k

views

R gdc rna-seq dna methylation

updated 4.3 years ago by Sean Davis 21k • written 4.3 years ago by RichardJActon ▴ 50

6

votes

5

replies

1.4k

views

limma rna-seq mixed model repeated measures

updated 4.4 years ago by Gordon Smyth 47k • written 4.4 years ago by mikhael.manurung ▴ 270

6

votes

6

replies

602

views

rna-seq design linear model glm

updated 3.0 years ago by Steve Lianoglou 13k • written 3.0 years ago by tmms • 0

6

votes

7

replies

2.6k

views

rnaseq rna-seq linear model limma

updated 5.9 years ago by Aaron Lun ★ 28k • written 5.9 years ago by Thomas Sandmann ▴ 80

6

votes

5

replies

1.0k

views

limma RNA-Seq voom voomWithQualityWeights edgeR

updated 2.9 years ago by Gordon Smyth 47k • written 2.9 years ago by pedrodcb • 0

5

votes

7

replies

1.4k

views

limma voom RNA-seq

updated 3.7 years ago by James W. MacDonald 62k • written 3.7 years ago by biomiha ▴ 20

5

votes

5

replies

1.2k

views

edger deseq2 rna-seq

updated 7.5 years ago by James W. MacDonald 62k • written 7.5 years ago by Johannes Rainer ★ 2.0k

5

votes

11

replies

2.1k

views

deseq2 R logfoldchange rna-seq

3.6 years ago • updated 3.5 years ago pierre.marin • 0

5

votes

2

replies

13k

views

deseq2 rna-seq DEGs cooks cutoff

updated 12 months ago by rickap • 0 • written 4.0 years ago by aishu.jp ▴ 30

5

votes

4

replies

1.4k

views

rna-seq normalization edgeR limma

updated 5.9 years ago by Gordon Smyth 47k • written 5.9 years ago by juls • 0

5

votes

3

replies

2.4k

views

edger r edger de rna-seq

updated 7.5 years ago by Gordon Smyth 47k • written 7.5 years ago by gthm ▴ 20

5

votes

5

replies

3.7k

views

deseq2 scRNA-Seq RNA-Seq differential expression analysis

updated 3.9 years ago by Michael Love 39k • written 3.9 years ago by hamza_karakurt ▴ 50

5

votes

3

replies

920

views

edger normalization counts RNA-seq

updated 3.6 years ago by Aaron Lun ★ 28k • written 3.6 years ago by Tima Karginov • 0

5

votes

6

replies

911

views

RUVSeq RUV RNA-seq

updated 2.3 years ago by James W. MacDonald 62k • written 2.4 years ago by karissa.barthelson ▴ 20

5

votes

5

replies

713

views

RNA-seq PCA control DESeq2 Quality

11 months ago • updated 8 months ago 9906201a ▴ 20

5

votes

1

reply

640

views

rna-seq edger ebseq differential expression

updated 4.6 years ago by Aaron Lun ★ 28k • written 4.6 years ago by marhabaie • 0

5

votes

3

replies

1.6k

views

limma contrast matrix limma design matrix limma rna-seq limma voom

updated 5.8 years ago by Aaron Lun ★ 28k • written 5.8 years ago by Jane Park • 0

5

votes

7

replies

2.0k

views

WGCNA RNA-seq

updated 4.6 years ago by Peter Langfelder ★ 2.7k • written 4.6 years ago by modarzi ▴ 10

5

votes

9

replies

664

views

GSVA RNA-Seq RSEM Expected_Count

6 months ago Yang Shi • 0

5

votes

6

replies

654

views

edger differential expression rna-seq

updated 3.4 years ago by Yunshun Chen ▴ 780 • written 3.4 years ago by acs1990 ▴ 10

5

votes

7

replies

2.5k

views

limma duplicateCorrelation rna-seq technical replicates biological replicates

updated 3.3 years ago by Aaron Lun ★ 28k • written 3.3 years ago by paul.alto ▴ 50

5

votes

5

replies

955

views

edger rna-seq

updated 7.0 years ago by Aaron Lun ★ 28k • written 7.0 years ago by Koen Van den Berge ▴ 180

5

votes

7

replies

1.1k

views

edger rna-seq

updated 6.8 years ago by Aaron Lun ★ 28k • written 6.8 years ago by jhj89 ▴ 10

5

votes

3

replies

2.3k

views

edgeR differential expression rna-seq

updated 6.4 years ago by Gordon Smyth 47k • written 6.4 years ago by lynski008 • 0

5

votes

12

replies

3.7k

views

rna-seq deseq2

updated 15 months ago by AZ ▴ 30 • written 5.3 years ago by gtho123 ▴ 40

5

votes

4

replies

1.1k

views

limma rnaseq rna-seq model-matrix multiple factor design

updated 5.5 years ago by Aaron Lun ★ 28k • written 5.5 years ago by smurray ▴ 10

5

votes

3

replies

815

views

deseq2 rna-seq

updated 3.5 years ago by Michael Love 39k • written 3.5 years ago by jpc41 ▴ 20

4

votes

4

replies

1.5k

views

edgeR batch-effect RNA-seq read counts ngs

updated 4.0 years ago by Aaron Lun ★ 28k • written 4.0 years ago by Roman ▴ 20

4

votes

3

replies

18k

views

rna-seq rnaseq r

updated 3.5 years ago by Gordon Smyth 47k • written 4.1 years ago by g.k • 0

4

votes

6

replies

2.6k

views

deseq2 normalization rna-seq TCGA vst

updated 3.9 years ago by Michael Love 39k • written 3.9 years ago by Marc Saric ▴ 70

4

votes

1

reply

2.2k

views

limma rna-seq multi-mapped reads normalization microbiome

updated 6.3 years ago by Steve Lianoglou 13k • written 6.3 years ago by tealfurn ▴ 10

4

votes

11

replies

1.6k

views

summarizeoverlaps summarizedexperiment count matrix low counts rna-seq

updated 7.0 years ago by Valerie Obenchain ★ 6.7k • written 7.0 years ago by shania90.lk ▴ 10