updated 4 days ago by
Gordon Smyth
50k
•
written 11 days ago by
Netanel
•
0
Recent ...
Replies
Answer: OrgDb for maize
by
James W. MacDonald
65k
```
> library(AnnotationHub)
> hub <- AnnotationHub()
|===========================| 100%
snapshotDate(): 2023-10-23
> query(hu…
Comment: Which input file is used for DGEList in EgdeR?
by
i.atanasoai
•
0
Understood, Thank you very much for the reply, very kind.
Comment: Which input file is used for DGEList in EgdeR?
by
Michael Love
41k
"gene_counts_length_scaled.tsv file generated by the nf-core be exactly that?"
No that is the counts scaled by the length. Counts + offset…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Michael Love
41k
These genes are fine. They are just the ones where, by chance, the sample variance is below the sample mean. It happens. DESeq2 brings thes…
Comment: DEG with low counts
by
Michael Love
41k
These counts are too low, only a few samples above a count of 10. So for typical RNA-seq data that is underpowered to call differences.
It…
Votes
Awards
• All
Popular Question to
shepherl
3.8k
Popular Question to
BioinfGuru
▴
30
Popular Question to
Gordon Smyth
50k
Scholar to
Peter Hickey
▴
740
Popular Question to
sropri
•
0
Locations
• All
Sweden, 1 minute ago
University of Applied Sciences Upper Austria, Hagenberg, Austria, 3 minutes ago
United States, 5 minutes ago
France, 8 minutes ago
Ireland, 8 minutes ago
Sweden, 1 minute ago
University of Applied Sciences Upper Austria, Hagenberg, Austria, 3 minutes ago
United States, 5 minutes ago
France, 8 minutes ago
Ireland, 8 minutes ago
Traffic: 876 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6