Bioconductor RNA-Seq

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GeneExpression GenomicFeatures RNA-Seq TPM

updated 7 months ago by Gordon Smyth 50k • written 7 months ago by gingergeiger22 • 0

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7.7k

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deseq2 edgeR rna-seq

updated 1 day ago by Elizabeth • 0 • written 8.8 years ago by gthm ▴ 30

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263

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rna-seq edgeR

updated 4 days ago by Gordon Smyth 50k • written 11 days ago by Netanel • 0

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isoformswitchanalyzeR rna-seq splice-variants

written 5.0 years ago by saddamhusain77 • 0

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2.2k

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Spike-in RNASeqR DESeq2 Normalization rna-seq

updated 7 months ago by manuel.fernandez • 0 • written 2.0 years ago by cicely.day • 0

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3.5k

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RNA-seq featureCounts ht-seq

written 3.7 years ago by ag1805x ▴ 80

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894

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correlation pearsoncorrelation rna-seq differential gene expression

updated 4 months ago by ATpoint ★ 4.0k • written 6.0 years ago by saad_k6 • 0

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666

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RNA-seq DESeq2

6 months ago ar14g12 • 0

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1.2k

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filtering RNA-Seq CPM edgeR filterByExpr

updated 10 months ago by Gordon Smyth 50k • written 10 months ago by mohammedtoufiq91 ▴ 10

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661

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rna-seq salmon fishpond swish

updated 10 months ago by Michael Love 41k • written 10 months ago by samuelcjx • 0

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692

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RNA-Seq normalization PCR_efficiency bias intrasample_comparison

updated 11 months ago by James W. MacDonald 65k • written 11 months ago by FedeXander • 0

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632

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DEXSeq RNA-seq DESeq2

updated 7 months ago by Alejandro Reyes ★ 1.9k • written 7 months ago by Alice • 0

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839

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BatchEffect lfcshrink RNA-seq DESeq2

8 months ago Eva ▴ 10

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297

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RNA-Seq WGCNA Worms

4 months ago davca • 0

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1.2k

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gage rna-seq pathwayanalysis

updated 11 months ago by Rob • 0 • written 3.5 years ago by microPhD • 0

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831

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RNA-Seq sequencer library_size sequency_depth multiplexing offtopic

updated 11 months ago by James W. MacDonald 65k • written 11 months ago by FedeXander • 0

16 results • Page 1 of 1

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Answer: Cannabis and KEGGgraph by deeenes ▴ 30

Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…

Answer: RNAseq:Technical replicates from different batches by Gordon Smyth 50k

I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…

Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param by russ.bainer ▴ 10

Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…

Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Chris • 0

Hi Robert, If I don't want to use all pathway in c2 gene set but only a few pathways of interested, how can I do that? So we try to get a …

Comment: How to retrieve detailed regression results from deseq2 by Weiqian ▴ 10

Hi Michael, thanks for the answer! I'll have a look : )

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Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

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