Bioconductor RNASEQ

Showing : RNASEQ • reset

votes

120

views

scRNAseq RNAseq

updated 14 days ago by ATpoint ★ 4.0k • written 16 days ago by Merav • 0

votes

replies

690

views

biomart rnaseq

written 5.2 years ago by jarod_v6@libero.it ▴ 40

votes

115

views

limma edgeR RNASeq

updated 6 days ago by Gordon Smyth 50k • written 7 days ago by Shaimaa Gamal • 0

votes

views

DESeq2 LongRead DEXSeq IsoformSwitchAnalyzeR RNASeq

updated 6 days ago by Michael Love 41k • written 7 days ago by 09191919 • 0

votes

replies

151

views

technicalReplicates BatchEffect limma RNASeq

5 days ago • updated 3 days ago catv • 0

votes

replies

886

views

SingleCell RNASeq RNASeqData scRNAseq

updated 7 days ago by wichaidi • 0 • written 17 months ago by irvin.ng • 0

votes

replies

1.8k

views

RNASeq edgeR RNASeq edgeR

updated 23 days ago by Gordon Smyth 50k • written 11.5 years ago by Maria Keays ▴ 30

votes

views

limma RNASeq voom

updated 2 days ago by Gordon Smyth 50k • written 2 days ago by taur.vil • 0

votes

views

DESeq2 RNAseq

updated 15 hours ago by Michael Love 41k • written 18 hours ago by kcarey • 0

vote

replies

810

views

clusterProfiler RNASeq

updated 1 day ago by Guangchuang Yu ★ 1.2k • written 13 months ago by ruiqi.li ▴ 10

10 results • Page 1 of 1

Recent ...

Replies

Comment: Reproducibility issue with scran together with lapply and BiocParallel by ATpoint ★ 4.0k

Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…

Answer: Reproducibility issue with scran together with lapply and BiocParallel by Aaron Lun ★ 28k

IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…

Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0

I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…

Votes

C: null model and DEXSeqDataSet object in DEXSEQ

A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?

A: How to explain how DESeq2 works to someone with zero bioinformatics background?

Answer: Interpret plot from DiffBind

Answer: How to retrieve gene ontology GO class from gene list?

Awards • All

Supporter to JKim • 0