Bioconductor RNASEQ

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7.3k

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RUVg ruvseq rnaseq

updated 28 days ago by Shaimaa Gamal • 0 • written 8.9 years ago by Pauly Lin ▴ 150

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750

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clusterProfiler RNASeq

updated 1 day ago by sredemption • 0 • written 13 months ago by ruiqi.li ▴ 10

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limma edgeR RNASeq

updated 12 hours ago by Gordon Smyth 50k • written 1 day ago by Shaimaa Gamal • 0

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DESeq2 LongRead DEXSeq IsoformSwitchAnalyzeR RNASeq

updated 1 day ago by Michael Love 41k • written 1 day ago by 09191919 • 0

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technicalReplicates BatchEffect limma RNASeq

6 hours ago catv • 0

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871

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SingleCell RNASeq RNASeqData scRNAseq

updated 2 days ago by wichaidi • 0 • written 17 months ago by irvin.ng • 0

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106

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scRNAseq RNAseq

updated 9 days ago by ATpoint ★ 4.0k • written 11 days ago by Merav • 0

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1.8k

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RNASeq edgeR RNASeq edgeR

updated 17 days ago by Gordon Smyth 50k • written 11.5 years ago by Maria Keays ▴ 30

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198

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DESeq2 GeneFiltering RNAseq

4 weeks ago • updated 29 days ago kcarey • 0

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688

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biomart rnaseq

written 5.2 years ago by jarod_v6@libero.it ▴ 40

10 results • Page 1 of 1

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Comment: How to retrieve detailed regression results from deseq2 by Weiqian ▴ 10

Hi Michael, thanks for the answer! I'll have a look : )

Comment: DESeq filtering specific to contrasts by Michael Love 41k

It will likely not filter it out, but really the per-dataset details would affect the results.

Comment: DESeq filtering specific to contrasts by Carlin95 • 0

Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…

Comment: FilterByExpr low counts with small sample size by Jonathan ▴ 10

Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…

Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0

Thank you very much for your reply! I will do so. Kind regards, Seyram

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Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

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Popular Question to James W. MacDonald 65k