Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
RNASeq123
•
reset
12
votes
4
replies
4.3k
views
differential expression analysis of htseq data with edgeR/voom
voom
htseq
edgeR
limma
RNASeq123
updated 5.2 years ago by
Gordon Smyth
50k • written 6.8 years ago by
wd
▴ 30
1
vote
3
replies
4.2k
views
Using TMM normalized counts in Deseq2
RNAseq123
written 3.2 years ago by
mmicky5050
• 0
0
votes
3
replies
753
views
DESeq2 Statistic - Padj NA
DESeq2
RNAseq123
rnaseq
deseq2
metatranscriptomic
updated 15 months ago by
Michael Love
41k • written 15 months ago by
irish.prg
• 0
5
votes
6
replies
2.3k
views
Large difference in PCA plot based on LCPM (log counts per million) and VST (variance stabilizing transformations)
PCAtools
edgeR
pcaExplorer
RNASeq
RNAseq123
23 months ago
Alan
• 0
2
votes
5
replies
949
views
Can we massively improve RNA-Seq results by slightly reducing the counts in it?
edgeR
RNAseq123
updated 16 months ago by
Gordon Smyth
50k • written 16 months ago by
Istvan Albert
▴ 50
0
votes
1
reply
780
views
python and R
snpeff
python
tophat
r
RNAseq123
updated 2.7 years ago by
Kevin Blighe
★ 3.9k • written 2.7 years ago by
kusum
• 0
0
votes
1
reply
1.4k
views
Confused about understanding the output and statistics of BAM file after STAR aligning
RNAseq123
VariantFiltering
Alignment
VariantAnnotation
updated 16 months ago by
James W. MacDonald
65k • written 16 months ago by
Mohamed
▴ 30
2
votes
1
reply
966
views
Error in RNAseq123 analysis, unexpected symbol.
RNAseq123
Rna
updated 21 months ago by
Gordon Smyth
50k • written 21 months ago by
Mikołaj Mierzejewski
• 0
0
votes
2
replies
481
views
Deseq2 paird analysis in a cohort mixed of paired and unpaired samples
DESeq2
RNAseq123
13 months ago
fatemeh.peimani
• 0
1
vote
6
replies
2.9k
views
KEGG enrichment analysis for non model organism
RNAseq123
15 months ago
afsanarupa1
• 0
1
vote
1
reply
277
views
Differential gene expression analysis
RNASeqData
RNAseq123
updated 3 months ago by
ATpoint
★ 4.0k • written 3 months ago by
kaurprab
• 0
1
vote
1
reply
1.2k
views
featureCounts running too long
RNAseq123
updated 7 weeks ago by
difraiadomenico
• 0 • written 3.1 years ago by
demirkalecy
▴ 10
0
votes
0
replies
506
views
Plotting a line plot for genes across 4-species
RNAseq123
20 months ago
Mohamed
▴ 30
0
votes
0
replies
487
views
Circular RNA
CircularRNA
RNASeq
RNAseq123
3.1 years ago
rpokhre2
• 0
1
vote
1
reply
644
views
Confused about design for RNA seq experiment
RNAseq
ExperimentData
RNAseq123
RNA
ExperimentalDesign
updated 18 months ago by
ATpoint
★ 4.0k • written 18 months ago by
Mohamed
▴ 30
15 results • Page
1 of 1
Recent ...
Replies
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Votes
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
Awards
• All
Popular Question
to
michael.s
• 0
Popular Question
to
James W. MacDonald
65k
Popular Question
to
Pierre Lindenbaum
▴ 10
Popular Question
to
Gordon Smyth
50k
Popular Question
to
Jenny Drnevich
★ 2.0k
Locations
• All
United States,
just now
Austria,
15 minutes ago
Boston University,
16 minutes ago
United States,
24 minutes ago
United States,
26 minutes ago
Traffic: 748 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6