Bioconductor RNASeq123

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voom htseq edgeR limma RNASeq123

updated 5.3 years ago by Gordon Smyth 50k • written 6.9 years ago by wd ▴ 30

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RNAseq123

written 3.3 years ago by mmicky5050 • 0

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RNAseq123

16 months ago afsanarupa1 • 0

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PCAtools edgeR pcaExplorer RNASeq RNAseq123

2.0 years ago Alan • 0

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1.4k

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RNAseq123 VariantFiltering Alignment VariantAnnotation

updated 17 months ago by James W. MacDonald 65k • written 17 months ago by Mohamed ▴ 30

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RNAseq123

updated 10 weeks ago by difraiadomenico • 0 • written 3.1 years ago by demirkalecy ▴ 10

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996

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edgeR RNAseq123

updated 16 months ago by Gordon Smyth 50k • written 17 months ago by Istvan Albert ▴ 50

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994

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RNAseq123 Rna

updated 22 months ago by Gordon Smyth 50k • written 22 months ago by Mikołaj Mierzejewski • 0

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802

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snpeff python tophat r RNAseq123

updated 2.7 years ago by Kevin Blighe ★ 3.9k • written 2.7 years ago by kusum • 0

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789

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DESeq2 RNAseq123 rnaseq deseq2 metatranscriptomic

updated 16 months ago by Michael Love 41k • written 16 months ago by irish.prg • 0

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RNAseq ExperimentData RNAseq123 RNA ExperimentalDesign

updated 19 months ago by ATpoint ★ 4.0k • written 19 months ago by Mohamed ▴ 30

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540

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RNAseq123

21 months ago Mohamed ▴ 30

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520

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DESeq2 RNAseq123

14 months ago fatemeh.peimani • 0

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496

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CircularRNA RNASeq RNAseq123

3.2 years ago rpokhre2 • 0

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RNASeqData RNAseq123

updated 4 months ago by ATpoint ★ 4.0k • written 4 months ago by kaurprab • 0

15 results • Page 1 of 1

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Comment: Differential peaks that were not identified in diffbind were identified in diseq by ATpoint ★ 4.0k

As expected normalization is **way** off, meaning in simple terms that the cloud is too high. The deep-blue area should be along y=0. Try t…

Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0

Thank you for your suggestions! Here is the MA plot: ![enter image description here][1] I tried several normalization methods with DiffBi…

Answer: OrgDb for maize by Guido Hooiveld ★ 3.9k

I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …

Comment: Theoretical WGCNA Question by Garrett • 0

Thanks Peter!

Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0

Thank you!

Votes

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

Comment: DEXSeq DEXSeqDataSet count matrix duplication

Comment: Error in champ.load(): The following specified files do not exist

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