Showing : RNASeqRData • reset
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RNA-seq analysis between a wildtype vs a double microRNA kockout mouse brain
microRNA gene RNASeqRData edgeR geneontology
18 months ago • updated 17 months ago faiza • 0
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3
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What should I do with RNA-Seq data to get a gene that work?
find RNASeqRData
updated 18 months ago by ★ 4.0k • written 18 months ago by • 0
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4
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1.4k
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merge TPM values for same geneID
RNASeqRData TPM
updated 18 months ago by ★ 4.0k • written 18 months ago by ▴ 10
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455
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how to create PHENO_DATA
RNASeq RNASeqData RNASeqRData
19 months ago marymshahi2021 • 0
0
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584
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DeSeq2 timecourse analysis
RNAseqRData DeSeq2
updated 2.1 years ago by 41k • written 2.1 years ago by • 0
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3.1k
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results(dds) error: couldn't find results. you should first run DESeq()
RNASeqRData
updated 2.1 years ago by 41k • written 2.1 years ago by • 0
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edgeR for SDE analysis
RNASeqRData edgeR RNASeqR RNASeqData
updated 2.1 years ago by 50k • written 2.2 years ago by • 0
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Is 100K genes too many to run ComBat_seq on?
RNASeqRData combat_Seq BatchEffect
2.6 years ago • updated 2.3 years ago zeegzaag • 0
0
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854
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Limma Voom Design and Contrast Matrix- Can my parameter also be a factor?
RNASeqRData limma RNASeq RNASeqR
updated 3.0 years ago by 50k • written 3.0 years ago by • 0
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2.6k
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How to download KEGG pathways for list of enriched genes
RNASeqRData GO
3.1 years ago Wuschel ▴ 10
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724
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display .CT files in a BioC package
RNAinteract rnaseqGene RNASeqRData rnaseqcomp
3.2 years ago Bogdan ▴ 670
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4
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1.1k
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DEseq2: working with unbalanced number of sample in tumor study?
Deseq2 RNASeqRData unbalancedsamplesize
updated 23 months ago by 41k • written 3.2 years ago by • 0
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How can I use bioconductor and Deseq2 in linux ubuntu 18
RiboProfiling DESeq2 Bioconductor RNASeqRData
updated 18 months ago by ★ 3.9k • written 3.2 years ago by • 0
13 results • Page 1 of 1
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Answer: OrgDb for maize by Guido Hooiveld ★ 3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
Comment: Theoretical WGCNA Question by Garrett • 0
Thanks Peter!
Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0
Thank you!
Comment: FGSEA pre-ranked input in increasing order or decreasing by alserg ▴ 240
They are reorder in the decreasing order.
Comment: significant difference of p-values with dream() after updating VariancePartition by Le • 0
Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…
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Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos
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