Bioconductor RNASeqRData

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793

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microRNA gene RNASeqRData edgeR geneontology

18 months ago faiza • 0

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658

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find RNASeqRData

updated 18 months ago by ATpoint ★ 4.0k • written 18 months ago by yuhang • 0

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1.4k

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RNASeqRData TPM

updated 19 months ago by ATpoint ★ 4.0k • written 19 months ago by prashali.bansal ▴ 10

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464

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RNASeq RNASeqData RNASeqRData

19 months ago marymshahi2021 • 0

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592

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RNAseqRData DeSeq2

updated 2.1 years ago by Michael Love 41k • written 2.1 years ago by Hannah • 0

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3.1k

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RNASeqRData

updated 2.1 years ago by Michael Love 41k • written 2.1 years ago by beslinail • 0

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780

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RNASeqRData edgeR RNASeqR RNASeqData

updated 2.2 years ago by Gordon Smyth 50k • written 2.2 years ago by vikycairoli • 0

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873

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RNASeqRData combat_Seq BatchEffect

2.6 years ago • updated 2.3 years ago zeegzaag • 0

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858

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RNASeqRData limma RNASeq RNASeqR

updated 3.1 years ago by Gordon Smyth 50k • written 3.1 years ago by Rita • 0

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2.6k

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RNASeqRData GO

3.2 years ago Wuschel ▴ 10

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RNAinteract rnaseqGene RNASeqRData rnaseqcomp

3.2 years ago Bogdan ▴ 670

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1.1k

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Deseq2 RNASeqRData unbalancedsamplesize

updated 23 months ago by Michael Love 41k • written 3.2 years ago by Cihat • 0

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RiboProfiling DESeq2 Bioconductor RNASeqRData

updated 18 months ago by Kevin Blighe ★ 3.9k • written 3.2 years ago by Taufiq • 0

13 results • Page 1 of 1

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Comment: Reproducibility issue with scran together with lapply and BiocParallel by ATpoint ★ 4.0k

Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…

Answer: Reproducibility issue with scran together with lapply and BiocParallel by Aaron Lun ★ 28k

IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…

Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0

I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…

Votes

C: null model and DEXSeqDataSet object in DEXSEQ

A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?

A: How to explain how DESeq2 works to someone with zero bioinformatics background?

Answer: Interpret plot from DiffBind

Answer: How to retrieve gene ontology GO class from gene list?

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Supporter to JKim • 0